BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324558
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17 |... 1417 0.0
AT3G60613.1 | Symbols: | Pseudogene of AT3G61250; AtMYB17 (myb... 302 5e-81
> AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17
| chr3:22671002-22672738 FORWARD LENGTH=1391
Length=1391
Score = 1417 bits (767), Expect = 0.0
Identities = 856/899 (95%), Gaps = 6/899 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAACACCTTGTTGTGACAAGAAAGGTTTGAAGAAAGGTCCATGGACGCCTGAA 60
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 305 ATGGGAAGAACACCTTGTTGTGACAAGATTGGTTTGAAGAAAGGTCCTTGGACGCCTGAA 364
Query 61 GAAGATGAGGTTCTTGTTGCACATATCAAGAAAAATGGACATGGAAGCTGGAGAACACTT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAAGATGAGGTTCTTGTTGCGCATATCAAGAAAAATGGACATGGAAGCTGGAGAACACTT 424
Query 121 CCTAAGCTTGCTGGTTTACTTCGCTGTGGGAAGAGTTGCAGGCTGAGATGGACAAACTAT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CCTAAACTTGCTGGTTTACTTCGCTGTGGGAAGAGTTGCAGGCTGAGATGGACAAACTAT 484
Query 181 CTGAGACCAGACATAAAGAGAGGTCCTTTCACTGCTGAGGAAGAGAAACTTGTTGTCCAG 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 485 CTGAGACCAGACATAAAGAGAGGTCCTTTCACTGCTGATGAAGAGAAACTTGTTATCCAG 544
Query 241 CTTCATGCCATTCTCGGCAACAGGTGGGCTGCTATTGCAGCACAGCTTCCAGGAAGAACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CTTCATGCCATTCTCGGCAACAGGTGGGCTGCTATTGCAGCACAGCTTCCAGGAAGAACA 604
Query 301 GACAACGAGATCAAGAACTTATGGAACACTCATTTGAAGAAACGTCTTTTATGTATGGGT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 605 GACAACGAGATCAAGAACTTATGGAACACTCATTTGAAGAAACGTCTTTTATCTATGGGT 664
Query 361 CTTGATCCCAGAACCCATGAGCCATTACCTTCATATGGGTTAGCCAAACAAGCTCCATCT 420
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 665 CTTGATCCCAGAACTCATGAGCCATTACCTTCATATGGGTTAGCTAAACAAGCTCCATCT 724
Query 421 TCACCAACTACTCGCCACATGGCTCAATGGGAAAGCGCTAGGGTTGAAGCTGAGGCAAGG 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 725 TCACCAACAACTCGCCACATGGCTCAATGGGAAAGTGCTAGGGTTGAAGCTGAGGCAAGG 784
Query 481 CTTTCTAGAGAATCAATGCTCTTTAGTCCTTCTTCTTACTCTGGTGTAGTTAAAACTGAT 540
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 785 CTTTCTAGAGAATCAATGCTCTTTAGCCCTTCTTTTTACTCTGGTGTAGTAAAAACTGAA 844
Query 541 TGTGATCACTTCTTACGCATTTGGAATTCTGAGATTGGTGAAGCTTTCAGAAATCTTGCT 600
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 845 TGTGATCACTTCTTACGCATTTGGAATTCCGAGATTGGTGAAGCTTTCAGGAATCTCGCT 904
Query 601 CCATTAGATGAATCAACTA---CTAGTCAAAGCACTTGCTCGAGGACAACATCTACATCA 657
||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || |||
Sbjct 905 CCATTAGATGAATCAACTATTACTAGTCAAAGCCCTTGCTCGAGGGCAACATCGACCTCA 964
Query 658 TCTGCACTTCTAAAGAGCTCAACAATTTCTTGTGGAGGGAAAGAGGTTACTGTGGCGATT 717
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 965 TCTGCACTTCTGAAGAGCTCAACAAATTCTTGGGGAGGGAAAGAGGTTACTGTGGCGATT 1024
Query 718 CATGGCTCAGAGTCTTCTCCATGTTCAAATGTTCTTGAAGATGATTCAACAGACTCTGCT 777
||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1025 CATGGCTCAGATTATTCTCCATATTCAAATGATCTTGAAGATGATTCAACAGACTCTGCT 1084
Query 778 CTTCAACTTCTGCTTGATTTTCCGATAAGCGATGATGATATGAGCTTCTTGGAAGAGAAC 837
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1085 CTTCAACTTCTGCTTGATTTCCCTATAAGCGATGATGATATGAGCTTCTTGGAAGAGAAC 1144
Query 838 ATTGACAGCTACTCACA--CAC-TCCTGTTGGTCTTGTCTCAATGGTTTCTAAATTCTA 893
||||||||||||||||| | | |||| |||||||||| || |||||||| ||||||||
Sbjct 1145 ATTGACAGCTACTCACAGGCTCCTCCTATTGGTCTTGTTTCCATGGTTTCCAAATTCTA 1203
> AT3G60613.1 | Symbols: | Pseudogene of AT3G61250; AtMYB17 (myb
domain protein 17); DNA binding / transcription factor |
chr3:22405547-22405829 REVERSE LENGTH=283
Length=283
Score = 302 bits (163), Expect = 5e-81
Identities = 187/199 (94%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 583 GCTTTCAGAAATCTTGCTCCATTAGATGAATCAACTACTAGTCAAAGCACTTGCTCGAGG 642
|||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GCTTTCAGAAATATTGCTCTATTAGATGAATCAACTACTAGTCAAAGCCCTTGCTCGAGG 60
Query 643 ACAACATCTACATCATCTGCACTTCTAAAGAGCTCAACAATTTCTTGTGGAGGGAAAGAG 702
||||| |||||||| | ||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 61 ACAACGTCTACATCCTTTGCACTTTTAAAGAGCTCAACAAATTCCTGTGGAGGGAAAGAG 120
Query 703 GTTACTGTGGCGATTCATGGCTCAGAGTCTTCTCCATGTTCAAATGTTCTTGAAGATGAT 762
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 121 GTTACTGTGGCGATCCATGGCTCAGAGTCTTCTCCATGTTCAAATGATCTTGAAGGTGAT 180
Query 763 TCAACAGACTCTGCTCTTC 781
|||||||||||||||||||
Sbjct 181 TCAACAGACTCTGCTCTTC 199
Score = 97.1 bits (52), Expect = 2e-19
Identities = 61/65 (94%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 832 GAGAACATTGACAGC--TACTCACACACTCCTGTTGGTCTTGTCTCAATGGTTTCTAAAT 889
||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 219 GAGAACATTGACAGCGGTACTCACAAACTCTTGTTGGTCTTGTCTCAATGGTTTCTAAAT 278
Query 890 TCTAA 894
|||||
Sbjct 279 TCTAA 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5