BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324562
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61310.1 | Symbols: | AT hook motif DNA-binding family prot... 1618 0.0
> AT3G61310.1 | Symbols: | AT hook motif DNA-binding family protein
| chr3:22690596-22692834 REVERSE LENGTH=1657
Length=1657
Score = 1618 bits (876), Expect = 0.0
Identities = 1009/1068 (94%), Gaps = 30/1068 (3%)
Strand=Plus/Plus
Query 1 ATGGATCGAAGAGAAGCAATGGCGTTATCCGGGTCGGGTTCTTACTATATCCAAAGAGGA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 ATGGATCGAAGAGACGCAATGGCGTTATCCGGGTCGGGTTCTTACTATATCCAAAGAGGA 449
Query 61 ATACCCGGTTCAGGtcctcctcctcctcctcAAACTCAACCTACGTTTCACGGATCACAA 120
|| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 450 ATCCCCGGTTCTGG---TCCTCCTCCTCCTCAAACTCAACCAACGTTTCACGGATCACAA 506
Query 121 GGATTTCATCATTTCACCAATTCCAACTCTCCTTTTGGG-----------------T-CA 162
||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 507 GGATTTCATCATTTCACCAATTCCATCTCTCCTTTTGGGTCAAACCCAAACCCAAATCCA 566
Query 163 AACCCTGGAGGTGGCTCTACTGGATTCGTGCCTCCTCCTTTACCCGTTGAGTCTTCTCCG 222
||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 567 AACCCTGGAGGTGTCTCTACTGGATTCGTGTCTCCTCCTTTACCCGTTGACTCTTCTCCG 626
Query 223 GCTGATTCTTCA---GCGGCGGCGGGAGCTGTGGTTGCTCCTCCTTCAGGTGACACGTCT 279
|||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 627 GCTGATTCGTCAGCGGCGGCGGCGGGAGCTTTGGTTGCTCCTCCTTCAGGTGACACGTCT 686
Query 280 CTGAAGCGGAAGAGAGGACGGCCTAGAAAATATGGACAAGA---TGGTTCTGTTTCGTTG 336
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 687 GTGAAGCGGAAGAGAGGACGGCCTAGAAAATATGGACAAGATGGTGGTTCTGTTTCGTTG 746
Query 337 GCATTGTCTCCTTCTATCTCCAACGTTTCCCCAAACTCTAACAAACGTGGCCGTGGAAGA 396
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 747 GCATTGTCTCCTTCTATCTCCAACGTTTCCCCGAACTCTAACAAACGTGGCCGTGGAAGA 806
Query 397 CCTCCTGGCTCCGGCAAGAAGCAACGGCTATCTTCCATTGGTGAAATGATGCATTCATCG 456
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 807 CCTCCTGGCTCCGGCAAGAAGCAACGGCTATCTTCCATTGGTGAAATGATGCCTTCATCA 866
Query 457 TCTGGAATGAGCTTCACACCGCACGTAATCGTAGTTTCCATTGGTGAAGACATTGCGTCA 516
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 867 ACTGGGATGAGCTTCACACCGCATGTAATCGTAGTTTCCATTGGTGAAGACATTGCTTCA 926
Query 517 AAGGTTATATCCTTTTCGCATCAAGGTCCACGAGCGATATGTGTTTTATCCGCAAGTGGC 576
||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 927 AAGGTTATATCGTTCTCGCATCAAGGTCCACGAGCGATATGTGTCTTATCCGCAAGTGGT 986
Query 577 GCTGTCTCTACTGCAACTCTTCTTCAGCCAGCACCATCACATGGAACTATTACATACGAG 636
||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 987 GCTGTCTCTACTGCAACTCTTCTTCAGCCAGCACCTTCTCATGGAACTATTATATACGAG 1046
Query 637 GGTCTATTCGAGCTCATATCTCTCTCAACTTCTTATCTGAACACAACTGACAATGACTAC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GGTCTATTCGAGCTCATATCTCTCTCAACTTCTTATCTGAACACAACTGACAATGACTAC 1106
Query 697 CCAAACCGCACTGGAAGTCTAGCGGTCTCACTTGCTAGCTCCGATGGTCGTGTCATTGGT 756
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1107 CCAAACCGCACTGGAAGTCTAGCGGTCTCACTTGCTAGCCCCGATGGTCGTGTCATTGGT 1166
Query 757 GGTGGAATTGGAGGTCCTCTAATAGCAGCAAGCCAAGTCCAGGTCATCGTTGGGAGCTTC 816
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1167 GGTGGAATTGGAGGTCCTCTAATAGCAGCAAGCCAAGTCCAGGTCATTGTTGGCAGCTTC 1226
Query 817 ATTTGGGCAATTCCGAAAGGGAAGATTAAAAAACGTGAAGAAACTTCTGAAGATGTCCAA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 ATTTGGGCAATTCCGAAAGGGAAGATTAAAAAACGTGAAGAAACTTCTGAAGATGTCCAA 1286
Query 877 GATACTGATGCTTTGGA---CAACAACGATAACACAGCAGCAACGTCACCTCCTGTTCCT 933
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GATACTGATGCTTTGGAAAACAACAACGATAACACAGCAGCAACGTCACCTCCTGTTCCT 1346
Query 934 CAGCAAAGTCAGAACCTTGTTCAGACTCCTGTAGGCATTTGGTCAACTGGTTCAAGGTCA 993
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CAGCAAAGTCAGAACATTGTTCAGACTCCTGTAGGCATTTGGTCAACTGGTTCAAGGTCA 1406
Query 994 ATGGATATGCATCACCCCCATATGGACATTGATCTAATGCGTGGATGA 1041
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATGGATATGCATCACCCCCATATGGACATTGATCTAATGCGTGGATGA 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5