BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324578
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61450.2 | Symbols: SYP73 | syntaxin of plants 73 | chr3:227... 1238 0.0
> AT3G61450.2 | Symbols: SYP73 | syntaxin of plants 73 | chr3:22738353-22740096
FORWARD LENGTH=1040
Length=1040
Score = 1238 bits (670), Expect = 0.0
Identities = 771/817 (94%), Gaps = 17/817 (2%)
Strand=Plus/Plus
Query 1 ATGGGCGTAGTTGATTTGATCACTAGGGTTGATTCCATCTGTAAGAAGTACGAAAAGTAT 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 103 ATGGGCGTAATTGATTTGATCACTAGGGTTGATTCCATCTGTAAAAAGTACGAAAAGTAT 162
Query 61 GATATCGATAAACAGAGAGAAGCTAATGTCTCCGGCGACGACGCTTTCTCCCGCCTTTAC 120
|||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 163 GATATCAATAGACAGAGAGACGCTAATGTCTCCGGCGACGATGCTTTCTCCCGCCTTTAC 222
Query 121 TCCGCCGTCGAATCTGCGCTCGAAACTGTTCTTCAGAAAACAGAGGATTTATCGTCTGAG 180
||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 223 TCCGCCGTCGAATATGCTCTCGAAACTGTTCTTCAGAAAACAGAGGATTTGTCGTCTGAG 282
Query 181 ACGAACAAAGCGAAAGCTGTGGCGATGAACGCAGAGATTCGAAGAACGAAAGCTCGATTG 240
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 283 ACAAACAAAGCGAAAGCTGTGGCGATGAACGCAGAGATTCGAAGAACTAAAGCTCGATTG 342
Query 241 CTTGAAGGAATTCCAAAACTTCAGAGACTTGCTCTCAAAAAGGTCAAAGGGCTTTCAAAG 300
|||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 343 CTTGAAGGAATTCCAAAACTTCAGAGGCTTTCTCTCAAAAAGGTCAAAGGACTTTCAAAG 402
Query 301 GAAGAGCTTGATGTTAGGAATGATTTGGTTTTGTCATTGAGAGATAAGATTGAGGCCATA 360
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GAGGAGCTTGATGCTAGGAATGATTTGGTTTTGTCATTGAGAGATAAGATTGAGGCCATA 462
Query 361 CCAGAAACCTCTGCTCCTGTTGTAGGTCGTTGGGAAGCTTCAACATCGTATTCGAATATC 420
||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 463 CCAGAAAGCTCTGCTCCTGTTGTAGGTGGTTGGGAAGCTTCAACATCGTACTCGAATATC 522
Query 421 AGATTCGATACTAATGTCTCAGATCACAGAATTGGTAGTGGATATTTCGAGCCAACCGGA 480
|||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||
Sbjct 523 AGATTCGATACTAATGTCTCGGATGACAGAATTGGTAGTGAATATTTCCAGCCAACCGGA 582
Query 481 GAGTCTGATCAGTTTAAACAAGAGTATGAGATTAAAAGAATAAAACAGGCAAGTGATCAA 540
||||||||||||||||| |||||||||||||| |||||||| ||| | | || ||||||
Sbjct 583 GAGTCTGATCAGTTTAAGCAAGAGTATGAGATGAAAAGAAT-AAA-A--C-AG-GATCAA 636
Query 541 GGATTGGATTACATAGCTGAAGGACTGGATACACTCAAGAATATGGCTCAGGACATCAAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GGATTGGATTACATAGCTGAAGGACTGGATACACTCAAGAATATGGCTCAGGACATCAAT 696
Query 601 GAGGAACTTGATAGACAAGAACCACTCATGGATGAAATAGATACAAAGATTGACAAGGCA 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GAGGAACTTGATAGGCAAGAACCACTCATGGATGAAATAGATACAAAGATTGACAAGGCA 756
Query 661 GCTACTGACCTGAAAAGCACCAATGTGAGGCTTAAGGATACTGTAACAAAG-------CC 713
||||||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 757 GCTACTGACTTGAAAAGCACCAATGTGAGGCTCAAGGATACTGTAACAAAGTTGAGATCC 816
Query 714 -GC---AACTTCTGCATAGACATCATCCTCTTATGCATACTCCTGGGAATCGCTGCCTTC 769
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AGCCGCAACTTCTGCATAGACATCATCCTCTTATGCATACTCCTGGGAATCGCTGCCTTC 876
Query 770 ATATACAACTCGGTGAAGTGAAAGCTGGTGATGCCTG 806
||||||||||| |||||||||||||||||||||||||
Sbjct 877 ATATACAACTCTGTGAAGTGAAAGCTGGTGATGCCTG 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5