BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324615
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61760.1 | Symbols: ADL1B, DL1B | DYNAMIN-like 1B | chr3:228... 2669 0.0
> AT3G61760.1 | Symbols: ADL1B, DL1B | DYNAMIN-like 1B | chr3:22860514-22864153
REVERSE LENGTH=1926
Length=1926
Score = 2669 bits (1445), Expect = 0.0
Identities = 1505/1535 (98%), Gaps = 0/1535 (0%)
Strand=Plus/Plus
Query 356 CTGCTGTGAGGCAGGAGATCTCGGATGAGACAGATCGTGAAACTGGTCGCAGCAGCAAAG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTGCTGTGAGGCAGGAGATCTCGGATGAGACAGATCGTGAAACTGGTCGCAGCAGCAAAG 419
Query 416 TAATTTCTACAGTCCCAATTCATCTCAGTATCTTCTCTCCTAATGTTGTGAATTTGACAC 475
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAATATCCACAGTCCCAATTCATCTCAGTATCTTCTCTCCTAATGTTGTGAATTTGACAC 479
Query 476 TTGTCGATCTTCCTGGGCTGACAAAGGTAGCTGTTGATGGCCAGCCTGAGAGCATTGTTC 535
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TTGTCGATCTTCCTGGGCTAACAAAGGTAGCTGTTGATGGCCAGCCTGAAAGCATTGTTC 539
Query 536 AAGACATCGAGAACATGGTCAGATCGTTTATTGAGAAGCCCAACTGCATCATACTAGCTA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 AAGACATCGAGAACATGGTCAGATCGTTTATTGAGAAGCCCAACTGCATCATACTTGCTA 599
Query 596 TTTCCCCTGCAAATCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTG 655
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 TTTCCCCTGCAAATCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTG 659
Query 656 ATCCAAAAGGAGACAGGACTTTTGGAGTTTTAACTAAAATTGATCTCATGGACCAAGGCA 715
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 660 ATCCCAAAGGAGACAGGACTTTTGGAGTTTTAACAAAAATTGATCTCATGGACCAAGGCA 719
Query 716 CTAATGCTGTTGATATACTTGAAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTAATGCTGTTGATATACTTGAAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTG 779
Query 776 TTGTAAACCGGTCTCAAGCTGACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCGGC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGTAAACCGGTCTCAAGCTGACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCGGC 839
Query 836 GTGAACGTGATTACTTCCAGACTAGCCCAGAATACAGACATTTAACTGACAGAATGGGTT 895
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 840 GTGAACGTGATTACTTCCAGACTAGCCCAGAGTACAGACATTTAACTGAAAGAATGGGTT 899
Query 896 CAGAGTATTTAGGAAAGATGCTCTCTAAGCATTTAGAAGTTGTTATCAAGTCGAGAATCC 955
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 900 CAGAGTATTTAGGAAAGATGCTCTCTAAGCATTTGGAAGTTGTTATCAAGTCTAGAATCC 959
Query 956 CGGGACTTCAGTCTCTTATCACAAAGACTATTTCCGAGTTAGAGACAGAGCTAAGCCATC 1015
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 960 CGGGACTTCAGTCTCTTATCACAAAGACAATTTCCGAGTTAGAGACAGAGCTAAGCCGTC 1019
Query 1016 TTGGGAAGCCTGTAGCAGCTGATGCTGGTGGAAAACTTTATATGATCATGGAAATTTGCC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTGGGAAGCCTGTAGCAGCTGATGCTGGTGGAAAACTTTATATGATCATGGAAATTTGCC 1079
Query 1076 GTGCCTTTGATCAAACTTTTAAAGAACACCTTGATGGCACGCGTTCAGGTGGTGAAAAGA 1135
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 GTGCCTTTGATCAAACTTTTAAAGAACACCTGGATGGCACGCGTTCAGGTGGTGAAAAGA 1139
Query 1136 TAAATTCTGTGTTCGACAATCAATTCCCAGCTGCCATTAAAAGACTGCAATTCGACAAAC 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAAATTCTGTGTTCGACAATCAATTCCCAGCTGCCATTAAAAGACTGCAATTCGACAAAC 1199
Query 1196 ATCTCTCCATGGACAATGTACGGAAACTGATCACTGAAGCAGATGGATATCAACCTCATC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATCTCTCCATGGACAATGTACGGAAACTGATCACTGAAGCAGATGGATATCAACCTCATC 1259
Query 1256 TCATAGCTCCTGAACAAGGTTATCGCCGCCTCATAGAATCATGCTTAGTCTCCATTAGAG 1315
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1260 TCATAGCTCCTGAACAAGGTTATCGCCGGCTCATAGAATCATGCTTAGTCTCCATTAGAG 1319
Query 1316 GCCCTGCTGAAGCAGCTGTTGATGCGGTTCATTCCATTCTCAAGGATCTTATCCACAAAT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GCCCTGCTGAAGCAGCTGTTGATGCGGTTCATTCCATTCTCAAGGATCTTATCCACAAAT 1379
Query 1376 CCATCGGCGAAACATCAGAACTGAAGCAATATCCAACACTGAGAGTAGAAGTATCAGGTG 1435
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1380 CCATGGGCGAAACATCTGAACTGAAGCAATATCCAACACTCAGAGTAGAAGTATCAGGTG 1439
Query 1436 CAGCCGTGGATTCATTGGATCGAATGAGAGAAGAGAGCAGGAAAGCAACTCTGTTGCTAG 1495
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1440 CAGCCGTGGATTCATTGGATCGAATGAGAGACGAAAGCAGGAAAGCAACTCTGTTACTAG 1499
Query 1496 TGGACATGGAGTCTGGTTACTTAACGGTTGAGTTCTTCAGGAAACTCCCGCAAGATTCTG 1555
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1500 TGGACATGGAGTCTGGTTACTTAACGGTCGAGTTCTTCAGGAAACTCCCGCAAGATTCTG 1559
Query 1556 AAAAAGGTGGGAATCCGACACATTCGATATTCGACAGATACAACGATGCATATCTCCGAA 1615
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1560 AAAAAGGTGGGAATCCGACACATTCGATATTCGACAGATACAACGATGCTTATCTCCGAA 1619
Query 1616 GAATCGGTTCGAATGTGTTGTCTTATGTGAACATGGTCTGCGCTGGCTTGAGAAACTCCA 1675
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1620 GAATCGGCTCAAATGTGTTGTCATATGTGAACATGGTCTGCGCTGGCTTGAGAAACTCCA 1679
Query 1676 TACCGAAATCCATTGTTTACTGTCAAGTCCGTGAAGCAAAACGAAGCCTTCTAGACTTCT 1735
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1680 TACCGAAATCCATTGTTTACTGTCAAGTCCGTGAAGCAAAACGAAGCCTTCTAGACATCT 1739
Query 1736 TCTTCACCGAGCTTGGCCAGAAAGAGATGAGCAAATTGTCGAAATTGTTGGATGAGGATC 1795
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TCTTCACCGAACTTGGCCAGAAAGAGATGAGCAAATTGTCGAAATTGTTGGATGAGGATC 1799
Query 1796 CTGCGGTTCAGCAGCGAAGGACTTCGATTGCGAAGAGGCTGGAATTGTATAGAAGTGCTC 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CTGCGGTTCAGCAGCGAAGGACTTCGATTGCGAAGAGGCTGGAATTGTATAGAAGTGCTC 1859
Query 1856 AGACGGATATTGAAGCAGTTGCTTGGTCCAAGTAG 1890
| |||||||||||||||||||||||||||||||||
Sbjct 1860 AAACGGATATTGAAGCAGTTGCTTGGTCCAAGTAG 1894
Score = 518 bits (280), Expect = 1e-145
Identities = 292/298 (98%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAAAGAGCCTGTACTGCTCTGGGAGAT 60
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 62 ATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCTGTACGGCTCTGGGAGAT 121
Query 61 CACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGCCTGCAATTGCCGTCGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGCCTGCAATTGCCGTCGTC 181
Query 121 GGTGGTCAGAGTTCTGGAAAGTCTTCAGTGCTAGAGAGCGTTGTCGGAAAAGATTTTCTA 180
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 182 GGTGGTCAGAGTTCTGGAAAGTCTTCAGTGCTAGAGAGTGTTGTTGGAAAAGATTTTCTA 241
Query 181 CCTCGTGGAGCTGGGATTGTTACACGTAGACCTCTTGTCCTGCAGCTTCATAGAATTGAT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 242 CCTCGTGGAGCTGGGATTGTTACACGCAGACCTCTTGTCCTGCAGCTTCATAGAATTGAT 301
Query 241 GAAGGGAAAGAGTATGCAGAGTTTATGCATCTTCCAAAGAAGAAGTTCACCGATTTTG 298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 302 GAAGGGAAAGAGTATGCAGAGTTTATGCATCTTCCAAAGAAGAAGTTCACAGATTTTG 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5