BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324620
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61810.1 | Symbols: | Glycosyl hydrolase family 17 protein ... 1825 0.0
> AT3G61810.1 | Symbols: | Glycosyl hydrolase family 17 protein
| chr3:22877168-22878469 FORWARD LENGTH=1128
Length=1128
Score = 1825 bits (988), Expect = 0.0
Identities = 1085/1131 (96%), Gaps = 9/1131 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATGATACAT-ATGACGACGATG-AAATACGCTTTCTGGATTCTCCTGGTTTTTT 58
||||||||||| | | |||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 1 ATGAAGATGAT-CCTGATGACGACGATGCAAA-ACGCTTTCTGGATTCTCTTGGTTTTTT 58
Query 59 CCATCTCCATGGCTTCTTGCTCCATGATTCCATCGCTTGGAGGTCCACAAATCGGAATCA 118
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 59 CCATCTCAATGGCTTCTTGCTCCACGATTCCATCGCTTGTAGGTCCACAAATCGGAATCA 118
Query 119 ACTACGGACTATACAGCTCCAATCTTGAAG--A-TAGTCCAGTGATCGGAATCAACTATG 175
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 119 ACTACGGAGAATACAGCTCCAATCTTGAAGATAGTAGTCCAGTGATCGGAATCAACTATG 178
Query 176 GTCGTTACGGCTCAAACCTTCCTCAACCAGAAGCAATACCATCGCTAGTCAACTCTCTCT 235
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 179 GTCGTTACGGCTCAAACCTACCACCACCAGAAGCAATACCATCGCTAGTCAACTCTCTCT 238
Query 236 CCATCAAACATGTCAAAACCTTTGACTTGGATCCAAGAATCACCAAATCTTTCGCCAACA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CCATCAAACATGTCAAAACCTTTGACTTGGATCCAAGAATCACCAAATCTTTCGCCAACA 298
Query 296 CTGGAATCACTCTCTCCCTCTGTATCCCCAACGACAAGATCCCATCTCTAGCCACCAATC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTGGAATCACTCTCTCCCTCTGTATCCCCAACGACAAGATCCCATCTCTAGCCACCAATC 358
Query 356 TCTCCCAAGCTGAATCAATCATCAGAAATTTCATCTTACCTTACCACAAGAACACAATCA 415
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 TCTCCGAAGCTGAATCAATCATCAGAAACTTCATCTTACCTTACCACAAGAACACAATCA 418
Query 416 TCACAACGATCTCCGTCGGAAACGAAGTGTCCTTACTCCCGCAATTCTCCAACCACCTAG 475
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 TCACAGCAATCTCCGTCGGAAACGAAGTCTCCTTACTCCCGCAATTCTCCAACCACCTAG 478
Query 476 TCTCAGCGATGGTCAACGTTCACAAAGCAATCAAGAGATACAGATTACACAAGAAGATCA 535
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTCAGCTATGGTCAACGTTCACAAAGCAATCAAGAGATACAGATTACACAAGAAGATCA 538
Query 536 AAGTCTCCACAACACATTCCCTCGCGATTCTTTCCAGAAGATTCCCTCCTTCGACTGC-G 594
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 539 AAGTCTCCACAACGCATTCTCTCGCGATTCTTTCCAGAAGATTCCCTCCTTCGACTGCTG 598
Query 595 ATTTTCCATCAATCGATCGGTGATTCGGTTCTGAAACCACTCATAAGGTTTCTACAAAGA 654
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 599 -TTTTCCATCAATCGATCGGTGATTCGGTTTTGGAACCACTCATAAGGTTTCTACAAAGA 657
Query 655 ACAAATTCACCTCTGATGGTGAATGTTTACCCGTACCTCGCTTATAAACAATCATTCCCT 714
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 658 ACAAATTCACCTCTCATGGTGAACGTTTACCCTTACCTCGCTTATAAACAATCATTCCCT 717
Query 715 TCGATTCCTCTGGATTTTGCTCTGTTTCAGCCGATGAATAGCCCCAAACGCCGGAGATAC 774
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 718 TCGATTCCTCTGGATTTTGCTCTGTTTCAGCCGATGAACAGCCCCAGACGCCGGAGATAC 777
Query 775 ATAGATCCGTACACTGGAGTTGCATACACCAATCTGTTCGACATAATGTTGGATTCTGTT 834
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 778 ATAGATCCGTACACTGGAGTTGCATACACCAATCTGTTCGACATAATGCTGGATTCTGTT 837
Query 835 GACTCCGCCGTGAAATCCTTAGGGTTACCTAAAATTCCGGTGGTTGTATCGGAGATTGGG 894
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 GACTCCGCCGTGAAATCCTTAGGGTTACCTGAAATTCCGGTGGTTGTATCGGAGATTGGG 897
Query 895 TGGCCGTCGAGCGGAGATCCAGGTGAAACAGCTGCTAATTTGGAGAACGCTAGGGTTTTT 954
|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGGCCGACGAGGGGAGATCCGGGTGAAACAGCTGCTAATTTGGAGAACGCTAGGGTTTTT 957
Query 955 AACCAACGGCTCGTTGAGCATCTGAGAAGAAGATGGAATAAGGTTCCTGTGTATATCTTT 1014
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 958 AACCAACGGCTCGTTGAGCATCTGAGAAGAAGATGGAATAAAGTTCCGGTGTATATCTTT 1017
Query 1015 GCTCTGTTCGATGAAGATCAGAAAACTGGAGCCGCCGTGGAGAAACACTGGGGATTGCTT 1074
||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 1018 GCTCTGTTCGATGAAGACCAGAAAACTGGAAACGCCGTGGAGAAGCACTGGGGATTGCTT 1077
Query 1075 CACGGTAACGGATCGAGGAAGTATGATCTGAATTTCTCGCCGCCGATTTGA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TACGGTAACGGATCGAGGAAGTATGATCTGAATTTCTCGCCGCCGATTTGA 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5