BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324630
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61900.1 | Symbols: | SAUR-like auxin-responsive protein fa... 610 3e-174
AT2G46690.1 | Symbols: | SAUR-like auxin-responsive protein fa... 230 1e-59
> AT3G61900.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:22925813-22926379 FORWARD LENGTH=411
Length=411
Score = 610 bits (330), Expect = 3e-174
Identities = 392/419 (94%), Gaps = 15/419 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTCCGGAGAAAAAATCTTCAAGAGCGTCCATTCAAATCGTTCTAATAACGTGAAA 60
||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||||
Sbjct 1 ATGGGTTCCGGAGAAAAAATCCTCAAGAGCGTCCATTCAAACCGTCCCAATAACGTGAAA 60
Query 61 AGCAATAGCAAACAAGGAATCAAAGATGTTCCAAAAGGGTGTTTAGCAATCAAAGTGGGA 120
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AGCAATAGCAAACATGGGATCAAAGATGTGCCAAAAGGGTGTTTAGCAATCAAAGTGGGA 120
Query 121 TCAAAAGAAGAGGAGAAACAGAGATTTGTTGTTCCTGTTTTTTATTTTAACCATCCATTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAAAGAAGAGGAGAAACAGAGATTTGTTGTTCCTGTTTTTTATTTTAACCATCCATTG 180
Query 181 TTCATGCAACTCTTAAGGGAAGCAGAGGAAGAGTATGGATTCGAGCAGAAAGGTACCATC 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCATGCAACTCCTAAGGGAAGCAGAGGAAGAGTATGGATTCGAGCAGAAAGGTACCATC 240
Query 241 ACAATCCCTTGCCACGTGGATGTTTTTCGATACGTTCAAGACATGATCAACAGAGAGAGA 300
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 241 ACAATCCCTTGCCACGTGGAAGTTTTTCGATATGTTCAAGACATGATCAACAGAGAGAGA 300
Query 301 TCGCTtgatgatgatgatgatgCAAGCAAGCAAAAGGGTATAAAAATTTGTCTTTGTGGA 360
|||||||||||||||||||||||||||||||||| |||| | || | | |
Sbjct 301 TCGCTTGATGATGATGATGATGCAAGCAAGCAAACGGGT-T--------GT----G-G-A 345
Query 361 GCCAAACACGGCCTAACCCACAAGATTTGGAGTAGAAGTTCTAGTGGTGTTTGGAAATA 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 346 GCCAAACACGGCCTAACCCACAAGATTAGGAGTAGAAGTTCTAGTGGTGTTTGGAAATA 404
> AT2G46690.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr2:19180730-19181467 FORWARD LENGTH=738
Length=738
Score = 230 bits (124), Expect = 1e-59
Identities = 194/227 (85%), Gaps = 8/227 (4%)
Strand=Plus/Plus
Query 80 TCAAAGATGTTCCAAAAGGGTGTTTAGCAATCAAAGTGGGATCAAAAGAAGAGGAGAAAC 139
|||||||||||||||||||||||||||| |||||||||||||| ||| ||| ||| |||
Sbjct 236 TCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTGGGATCGCAAGGAGAAGAGCAAC 295
Query 140 AGAGATTTGTTGTTCCTGTTTTTTATTTTAACCATCCATTGTTCATGCAACTCTT-AAGG 198
|||||||| | ||||||||||| |||||||||||||||||||||||||| ||| | || |
Sbjct 296 AGAGATTTATCGTTCCTGTTTTGTATTTTAACCATCCATTGTTCATGCAGCTCCTGAAAG 355
Query 199 GAAGCAGAGGAAGAGTATGGATTCGAGCAGAAAGGT-ACCATCACAATCCCTTGCCACGT 257
||||||| || |||||||||||||| || ||||| ||||||||||| ||||| |||||
Sbjct 356 -AAGCAGAAGACGAGTATGGATTCGATCA-AAAGGGCACCATCACAATTCCTTGTCACGT 413
Query 258 GGATGTTTTTCGATACGTTCAAGACAT-GATCA-ACAGAGAGAGATC 302
||| | ||||| |||||||||| | | ||| | | ||||||||||
Sbjct 414 GGAGGAGTTTCGTTACGTTCAAG-CTTTGAT-AGATGGAGAGAGATC 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5