BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324667
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62330.1 | Symbols: | Zinc knuckle (CCHC-type) family prote... 2302 0.0
> AT3G62330.1 | Symbols: | Zinc knuckle (CCHC-type) family protein
| chr3:23062819-23065721 REVERSE LENGTH=1829
Length=1829
Score = 2302 bits (1246), Expect = 0.0
Identities = 1380/1444 (96%), Gaps = 11/1444 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGCACTAGATCGGACCCAGAGCTTGATGATGACTTTAGTGAAATCTACAAGGAG 60
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGGAAAGCACTAGATCAGATCCAGAGCTTGATGATGACTTTAGTGAAATCTACAAGGAG 103
Query 61 TATACTGGTCCTGCAAGTACTGTGACCAACAACACTATCCAAGACAAAGACAAACCTATC 120
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 104 TATACTGGTCCTGCAAGTGCTGTGACCAACAACAATATCCAAGACAAAGACAAACCTGTC 163
Query 121 AAACAACGTTCTGAAGAAAGATGTGAT---GAAGAAGAGCAACTACCTGACCCCAATTCT 177
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 164 AAACAACGTTCTGAAGAAAGATGTGATGAAGAAGAAGAGCAACTTCCTGATCCCAACTCT 223
Query 178 GTACCAACTGATTTCACTAGCCGAGAAGCTAAGGTTTGGGAGGCTAAATCCAAAGCTACT 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 224 GTACCAACTGATTTCACTAGCCGTGAAGCTAAGGTTTGGGAGGCTAAATCCAAAGCTACT 283
Query 238 GAGAGGAATTGgaagaagagaaaagaagaagaaATGATCTGTAAAATATGTGGCGAGTCT 297
|||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 284 GAGAGGAATTGGAAGAAGAGGAAAGAGGAAGAGATGATCTGTAAAATTTGTGGCGAGTCT 343
Query 298 GGTCATTTTACTCAGGGATGTCCATCTACACTTGGTGCCAACAGGAAGTCTCAAGAATTC 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 344 GGTCATTTTACTCAGGGATGTCCATCTACACTTGGTGCCAATAGGAAGTCTCAAGAATTC 403
Query 358 TTTGAAAGGGTACCAGCTAGGGACAATAATGTGAGAGTTTTGTTTACTGAGCAAGTTATA 417
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 404 TTTGAAAGGGTACCAGCTAGGGACAATAATGTGAGAGTTTTGTTTACTGAGAAAGTTATG 463
Query 418 GAAAGTATTGAAAGGGAGACCGGCTGCAAGATTAAAATGGATGAGAAGTTCATAATTGTT 477
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 464 GAAAGTATTGAAAGGGAGACCAGCTGCAAGATTAAATTGGATGAGAAGTTCATAATTGTT 523
Query 478 AGTGGCAAGGACAGATTAATCTTGAGGAAAGGTGTTGATGCTGTTCACAAGGTTAAGGAG 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGTGGCAAGGACAGATTGATCTTGAGGAAAGGTGTTGATGCTGTTCACAAGGTTAAGGAG 583
Query 538 GATGGTGAGATGAAAAGTTCTTCTGTTTCCCACAGGAGCAGATCGAGGTCACCTAGGCGA 597
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 584 GATGGTGAGATGAAAAGTTCTTCTGTTTCTCACAGGAGCAGATCCAGGTCACCTAGGCGA 643
Query 598 ACTTCTGTTGGTCCACCACGTGCTCGAAACTCTGAACCTCAAAGGCAGCACCCT-CCATC 656
||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 644 ACTTCTGTTGGACCATCACGTGCTCGAAACTCTGAACCTCAAAGGCAGCA-GCTGCCATC 702
Query 657 ACATGGTTCATCAAGTTTCCCAGAGCGCTCTGGAAGGCAAGATAAGTTTGTGGATAATCG 716
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ACATGGTTCGTCAAGTTTCCCAGAGCGCTCTGGAAGGCAAGATAAGTTTGTGGATAATCG 762
Query 717 TGTGCGCGAAGAGAATCGTATACGTGAGAATCAGCGAAATGTTTCC-CGAGGATCACCAC 775
| | |||||||||| |||| | |||||||||||| |||| | |||| |||||||||||||
Sbjct 763 TTTCCGCGAAGAGACTCGTGTTCGTGAGAATCAGAGAAACG-TTCCTCGAGGATCACCAC 821
Query 776 AAGCTTATGGTAGTGACAGAGCTCGGAGTCGTTCCACACATTCGAAATCTCCAGGGAGAC 835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 822 AAGCTTATGGTAGTGACAGAGCTCGGAGTCGTTCTACACATTCGAAATCTCCAGGGAGAC 881
Query 836 CACGTTATAGTGGATGGGATAAACCGTATGATAGGCAAAAGTCTGAGGTGAGTGGTTATA 895
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 882 CTCGTTATAGTGGATGGGATAAACCGTATGATAGGCAAAAGCCTGAGGTGAGTGGTTATA 941
Query 896 GGTCTGAAAGATGGGATCAGGAGAGAATGGGTGGCTCCAGCGATATTCAGGTGAGACATC 955
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 942 GGTCTGAAAGATGGGATCAAGAGAGAATGGGTGGCTCCAGCGATATTCAGGTGAGTCATC 1001
Query 956 AGTTTGAACGCCCTCCTTTCCCACAGACTTTAGAAGAACTAGAATTGGAATATACGAGGG 1015
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1002 AGTTTGAACGCCCTCCTTTCCCACAAACGTTAGAAGAACTAGAATTGGAATATACGAGGG 1061
Query 1016 ATGCAATGGAGCTTGaaaa-aaaGTGCGATAAAGAAGAAGATGAGGAGAA-AATTAAGCA 1073
||||| ||||||||||||| ||| ||||||| ||||||||||||||||| || |||||
Sbjct 1062 ATGCATTGGAGCTTGAAAAGAAA-CGCGATAAGGAAGAAGATGAGGAGAACAA-CAAGCA 1119
Query 1074 TCGTGAGACAATCCGGGAACTGAGAGAGAGTTACATGAAGAAACTGGCTGGGCTAAGGGG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1120 TCGTGAGACAATCCGGGAACTGAGAGAGAGTTACATGAAGAAACTGGCTGGACTAAGGGG 1179
Query 1134 TATGAATGCTAAACAATGGGATGAATTCCTTCAACTGGATGCTCAGAGACGTCAACAGCA 1193
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1180 TATGAATGCTAAACAATGGGATGACTTCCTTCAACTCGATGCTCAGAGACGTCAACAGCA 1239
Query 1194 AGCACGGCAGCAAAACTCTGGCCTGAATTATGGTAACTATAGACAGTTTCCTCCTTATGC 1253
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1240 AGCACGGCAGCAAAACTCTGGTCTGAGTTATGGTAACTATAGACAGTTTCCTCCTTATGC 1299
Query 1254 TGAGTTTGATGATGGCTACTCTTCAAATCCTCCTCCCTATGGTGGAAACAATGTGCCAAT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1300 TGAGTTTGATGATGGCTACTCTTCAAATCCTCCTCCCTATGGTGGAAACAATATGCCAAT 1359
Query 1314 GGATTCCAAGAGAAGATATCCAAATCATGGAGATAACTATTCTTCAAGGCATCAAGACAA 1373
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 GGATTCCAAGGGAAGATATCCAAATCATGGAGATAACTATTCTTCAAGGCATCAAGACAA 1419
Query 1374 CAATTATGGTGGGTTCCAACGCCAGAGACGTGAGGACTATGGAAAAGCCTACAATCGTTA 1433
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1420 CAATTATGGTGGGTTCCAACGCCAGAGACGTGAAGAATATGGAAAAGCCTACAATCGTTA 1479
Query 1434 TTAG 1437
||||
Sbjct 1480 TTAG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5