BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324693
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62680.1 | Symbols: PRP3, ATPRP3 | proline-rich protein 3 | ... 1046 0.0
AT1G54970.1 | Symbols: ATPRP1, RHS7, PRP1 | proline-rich protei... 518 4e-146
> AT3G62680.1 | Symbols: PRP3, ATPRP3 | proline-rich protein 3
| chr3:23182722-23183994 FORWARD LENGTH=1173
Length=1173
Score = 1046 bits (566), Expect = 0.0
Identities = 694/754 (92%), Gaps = 16/754 (2%)
Strand=Plus/Plus
Query 131 CTCCGGTTTACACCCCACCCGCCTACAAGCCA-AC-TCTTCCACCTCCGGTTTACACTCC 188
||||||||||||||||||| | |||||| || || | | |||||||||||||||||
Sbjct 259 CTCCGGTTTACACCCCACCGGTTTACAAG-CATACACCCT-CACCTCCGGTTTACACT-- 314
Query 189 CCCGCCAACTATTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTACTCTCTCACC 248
||||||||| ||||| || || ||||||||||| ||||||||||| |||||||||||
Sbjct 315 -AAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGTTTACAAGCCAACTCTCTCACC 373
Query 249 TCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCC 308
||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||
Sbjct 374 TCCGGTTTACACTAAACCCACTATCCCACCTCCCGTTTACACCCCACCGGTTTACAAGCC 433
Query 309 AACTCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACC 368
| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 434 -A-------A-CTCCGGTTTACACTAAGCCAACAATCCCACCTCCGGTTTACACTCCACC 484
Query 369 GGTTTACAAGCCTACTCCCTCACCTCCGGTCTACAAAAAGTCTCCAAGCTATTCTTCTCC 428
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 485 GGTTTACAAGCCTACTCCCTCTCCCCCGGTCTACAAAAAGTCTCCAAGCTATTCGTCTCC 544
Query 429 TCCTCCTCCATATGTACCAGAACCAACCTACACTCCACCCACCAAACCATACGTCCCAGA 488
|||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 545 TCCTCCTCCATACGTACCAAAACCAACCTACACTCCAACCACCAAGCCATACGTCCCAGA 604
Query 489 GATTCTTAAGGCCGTTGATGGCATCATTCTATGCAAAAACGGCTACGAAACCTACCCTAT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GATTCTTAAGGCCGTTGATGGCATCATTCTATGCAAAAACGGCTACGAAACCTACCCTAT 664
Query 549 TCTAGGAGCAAAGGTAGAGATTGTGTGCTCCGACCCAGCATCATACGGGAAAAGCAAGAA 608
||||||||||||| || |||||||||| |||||||||||||||||||| |||||||| |
Sbjct 665 TCTAGGAGCAAAGATACAGATTGTGTGTTCCGACCCAGCATCATACGGTAAAAGCAACAC 724
Query 609 CGAGGTTGTGATCTACAGTGATCCAACTGACTCTAAGGGATACTTCCACGTGTCTTTGAC 668
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 725 CGAGGTTGTGATCTACAGTAATCCAACTGACTCTAAGGGATACTTCCACTTGTCGTTGAC 784
Query 669 CAATATCAAGGATCTAGCTTACTGTCGTGTCAAGCTTTACTTCTCTCCGGTCGAGACTTG 728
|| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 785 CAGTATTAAGGATCTAGCTTACTGTCGTGTCAAGCTCTACTTATCTCCGGTCGAGACTTG 844
Query 729 CAAGAACCCGACCAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGTCGTTGTACGCATA 788
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 845 CAAGAACCCGACCAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGGCGTTGTACGGATA 904
Query 789 CCGTTTCTACTCTGACAAGAACTTGAAGCTCTTTAGCGTCGGACCTTTCTACTACACCGG 848
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 905 CCGTTTCTACCCGGACAAGAACTTGGAGCTCTTTAGCGTCGGACCTTTCTACTACACTGG 964
Query 849 TCCCAAGGCTGCCCCCGCCACTCCCAAATACTGA 882
||||||||||||||||||||||||||||||||||
Sbjct 965 TCCCAAGGCTGCCCCCGCCACTCCCAAATACTGA 998
Score = 532 bits (288), Expect = 2e-150
Identities = 355/387 (92%), Gaps = 5/387 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATCACACGCGCCTACTTGGCCATTTGCCTCATCCTCTCTTTGGTTACCATAGCC 60
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 57 ATGGCGATCACACGCTCCTCCTTGGCCATTTGCCTCATCCTCTCTTTGGTTACCATAACC 116
Query 61 ACCGCCGATTACTACTCTCCCTCATCTCCTCCGGTTTACAAATCACCGGAACACAAACCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACCGCCGATTACTACTCTCCCTCATCTCCTCCGGTTTACAAATCACCGGAACACAAACCC 176
Query 121 ACGCTTCCGTCTCCGGTTTACACCCCACCCGCCTACAAGCCAACTCT-TCCACCTCCGGT 179
||||| ||||||||||||||||| ||||||| |||||||| || || ||| ||||| ||
Sbjct 177 ACGCTCCCGTCTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCC-CCTCCAGT 235
Query 180 TTACACTCCCCCGCCAACTATTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTAC 239
|||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 236 CTACACTAA---GCCAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATAC 292
Query 240 TCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGT 299
| |||||||||||||||||||||||||||||||||||| || || ||||| ||||| ||
Sbjct 293 ACCCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGT 352
Query 300 TTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTA 359
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 353 TTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAACCCACTATCCCACCTCCCGTTTA 412
Query 360 CACTCCACCGGTTTACAAGCCTACTCC 386
||| ||||||||||||||||| |||||
Sbjct 413 CACCCCACCGGTTTACAAGCCAACTCC 439
Score = 261 bits (141), Expect = 8e-69
Identities = 180/199 (90%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 206 CTCCGGTTTACACCCCACCGGTTTACAAGCCTACTCTCTCACCTCCGGTTTACACTAAGC 265
||||||||||||| ||||| |||||||||||||| ||||| ||||| || ||||||||||
Sbjct 187 CTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGC 246
Query 266 CAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCA-ACTCTCTCACCTCCG 324
||||||||||||||||||||||||| ||||||||||||||| || || | ||||||||||
Sbjct 247 CAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAG-CATACACCCTCACCTCCG 305
Query 325 GTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACT 384
|||||||||||||||||||||||||| || || ||||| ||||| ||||||||||| |||
Sbjct 306 GTTTACACTAAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGTTTACAAGCCAACT 365
Query 385 CCCTCACCTCCGGTCTACA 403
| |||||||||||| ||||
Sbjct 366 CTCTCACCTCCGGTTTACA 384
Score = 196 bits (106), Expect = 2e-49
Identities = 167/194 (86%), Gaps = 14/194 (7%)
Strand=Plus/Plus
Query 139 TACACCCCACCCGCCTACAAGCCAACTCTTC-CACCTCCGGTTTACACTCCCCCGCCAAC 197
||||||||||||| ||||||||||||| || ||||||||||||||||| | || ||
Sbjct 339 TACACCCCACCCGTTTACAAGCCAACTC-TCTCACCTCCGGTTTACACT-AAAC-CC-AC 394
Query 198 TATTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTACTCTCTCACCTCCGGTTTA 257
||| |||||||| |||||||||||||||||||||||||| | | ||||||||||
Sbjct 395 TATCCCACCTCCCGTTTACACCCCACCGGTTTACAAGCC-A-------A-CTCCGGTTTA 445
Query 258 CACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCAACTCTCTC 317
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 446 CACTAAGCCAACAATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCCCTC 505
Query 318 ACCTCCGGTTTACA 331
|| ||||| ||||
Sbjct 506 TCCCCCGGTCTACA 519
Score = 178 bits (96), Expect = 9e-44
Identities = 116/126 (92%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 278 CTCCGGTTTACACTCCACCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGC 337
||||||||||||||||||| ||||||||||| || ||||| ||||| || ||||||||||
Sbjct 187 CTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGC 246
Query 338 CAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCCCTCACCTCCGG 397
||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 247 CAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACACCCTCACCTCCGG 306
Query 398 TCTACA 403
| ||||
Sbjct 307 TTTACA 312
> AT1G54970.1 | Symbols: ATPRP1, RHS7, PRP1 | proline-rich protein
1 | chr1:20505000-20506488 FORWARD LENGTH=1258
Length=1258
Score = 518 bits (280), Expect = 4e-146
Identities = 561/685 (82%), Gaps = 65/685 (9%)
Strand=Plus/Plus
Query 223 CCGGTTTACAAGCCTACTCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCG 282
||||||| ||||||||| ||||| ||||| |||||||||||||||||| || ||||| ||
Sbjct 364 CCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCACCTACG 423
Query 283 GTTT--------ACA----CTCCACCGGTTTAC---AAGCCAACTCTCTCACCTCCGGTT 327
|||| ||| |||| |||||| || ||||||| |||||| |||||||||
Sbjct 424 GTTTACAAGCCAACACTCTCTCCTCCGGTTAACAATAAGCCAAGTCTCTCGCCTCCGGTT 483
Query 328 TACACTAAGCCAACTA-TCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCC 386
| || |||||||| | || | ||||||||||||||| | | ||| || ||||
Sbjct 484 T--AC-AAGCCAAC-ACTCTCTCCTCCGGTTTACACT--A--AG---CCAA--CT-CTCC 529
Query 387 CTCACCTCCGGTCTACAAAAAGTCTCCAAGCTATTCTTCTCCTCCTCCTCCATATGTACC 446
|| ||||||||||||||||||||||||||||| ||||||||| ||||||| || |||
Sbjct 530 CT--CCTCCGGTCTACAAAAAGTCTCCAAGCTA---TTCTCCTCCACCTCCATTTGCACC 584
Query 447 AGAACCAACCTACACTCCACCCACCAAACCATACGTCCCAGAGATTC-TTAAGGCCGTTG 505
| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 585 AAAACCAACCTACACTCCACCCACCAAACCATACGTCCCAGAGAT-CATTAAAGCCGTTG 643
Query 506 -ATGGCATCATTCT-ATGCAAAAACGGCTACGAAACCTACCCTATTCTAGGAGC-AAAGG 562
| |||||||| || |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 644 GA-GGCATCAT-CTTATGCAAAAACGGCTACGAAACCTACCCTATTCAAGGAGCGAAAGC 701
Query 563 TAGAGATTGTGTGCTCCGACCCAGCATCATACGGGAAAAGCAAGAACGAGGTTGTGATCT 622
| ||||||||||||| || | ||||||| ||| || |||||||||||||| ||||
Sbjct 702 AA-AGATTGTGTGCTCGGAGAGGGGGTCATACGAGAAGAGTAAGAACGAGGTTGTCATCT 760
Query 623 ACAGTGATCCAACTGACTCTAAGGGATACTTCCACGTG-TCTTTGACCAATATCAAGGAT 681
|||||||||||||||||| ||||||||||||||||||| | || ||| | |||||| |
Sbjct 761 ACAGTGATCCAACTGACTTTAAGGGATACTTCCACGTGGTGTTA-ACCCACATCAAGAAC 819
Query 682 CTAGCTTACTGTCGTGTCAAGCTTTACTTC-TCTCCGGTCGAGACTTGCAAGAACCCGAC 740
||| || |||| ||||||||||| ||| | ||||| |||||||||||||||||||| ||
Sbjct 820 CTATCTAACTGCCGTGTCAAGCTCTACA-CATCTCCCGTCGAGACTTGCAAGAACCCAAC 878
Query 741 CAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGTCGTTGTACGCATACCGTTTCTACTC 800
|||||| |||||||||||||| ||||||||||| | | || || || || | |
Sbjct 879 CAATGTCAACAAGGGTCTCACCGGAGTTCCCTT--C-T----CG-AT---GTA-CT-C-C 924
Query 801 TGACAAGAACTTGAAGCTCTTTAGCGTCGGACCTTTCTACTACACCG--G-TCCCAAGGC 857
|||||||||||||||||||| | ||| || |||||||||| ||||| | | |||||||
Sbjct 925 -GACAAGAACTTGAAGCTCTTCAACGTTGGTCCTTTCTACTTCACCGCCGGTTCCAAGGC 983
Query 858 TGCCCCCGCCACTCCCAAATACTGA 882
||| ||||||||||||| |||||||
Sbjct 984 TGCTCCCGCCACTCCCAGATACTGA 1008
Score = 182 bits (98), Expect = 7e-45
Identities = 179/216 (83%), Gaps = 14/216 (6%)
Strand=Plus/Plus
Query 131 CTCCGGTTTACACCCCACCCGCCT-ACAAGCCAACTCTTCCACCTCCGGTTTACACTCC- 188
||||||||||||| || ||| | | || || || |||||||||||||||||||||||
Sbjct 89 CTCCGGTTTACACTTCA-CCGGTTAATAAACCCACGCTTCCACCTCCGGTTTACACTCCA 147
Query 189 CCCG--C-C-AA-CTA---TTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTACT 240
|| | | | || ||| |||||||||| |||||||| ||||| || ||||||||||
Sbjct 148 CCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACTCCACCTGTCCACAAGCCTACA 207
Query 241 CTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTT 300
|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 208 CTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTCCGGCTTACACTCCACCGGTT 267
Query 301 TACAA---GCCAACTCTCTCACCTCCGGTTTACACT 333
||||| |||||| ||| || |||| || ||||||
Sbjct 268 TACAATAAGCCAACGCTCCCAGCTCCTGTCTACACT 303
Score = 154 bits (83), Expect = 1e-36
Identities = 175/216 (81%), Gaps = 19/216 (9%)
Strand=Plus/Plus
Query 205 CCTCCGGTTTACACCCCACCGGTTTACAAGCCTACTC-TCTCACCTCCGGTTTACACT-- 261
|||||||||||||| |||||||| | || || || | || |||||||||||||||||
Sbjct 88 CCTCCGGTTTACACTTCACCGGTTAATAAACCCACGCTTC-CACCTCCGGTTTACACTCC 146
Query 262 A--AG--C-C-AA-CTA---TCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCAAC 311
| | | | || ||| | |||||||| |||||||||||||| || ||||||| ||
Sbjct 147 ACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACTCCACCTGTCCACAAGCCTAC 206
Query 312 TCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGT 371
|||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 207 ACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTCCGGCTTACACTCCACCGGT 266
Query 372 TTACAA---GCCTACTC-CCTCACCTCCGGTCTACA 403
|||||| ||| || | || || |||| |||||||
Sbjct 267 TTACAATAAGCCAACGCTCC-CAGCTCCTGTCTACA 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5