BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324722
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 444 3e-124
> AT3G62990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G47950.1); Has
22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23282773-23283368
FORWARD LENGTH=596
Length=596
Score = 444 bits (240), Expect = 3e-124
Identities = 355/405 (88%), Gaps = 30/405 (7%)
Strand=Plus/Plus
Query 1 ATGAACATGACAAAGAACAACGTCGTTGAAGTGTCACCATTTTTGTTCATGGAAGCATCT 60
|||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 31 ATGAACATGACAAAGAACAACGTCGTTGAAGTGTCAACATTTTTGTTCTTCGAAGCATCT 90
Query 61 GCAGATTCCGAGACGACCCATCAGGAACGTGGACACGATGGAGATGATGTGAAAGGTCGT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 91 GCAGATTCCGAGACGACCCATCAGGAACGTGGACACGATGGCGATGATGTGAAAGGTTGT 150
Query 121 GAAGAATGTGGTGAAGATGCTGAGTCATGCAGGTGCGAGACGTCAACGAGTCAAAGGACG 180
|| || || ||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 151 GACGATTGCGGTGAAGATGCTGAGTCATGCAGGTGCGAGATGTCAACGAGTCAGAGGATG 210
Query 181 AGTAGGTCAACGGATTTTGACCCGGTTGAAGAAGAAGCTGACGTCGCCGGAGAAAATGAA 240
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 211 AGTAGGTCAACGGATTTTGACACGGTTGAAGAAGTAGCTGACGTCGCCGGAGAAAATGAA 270
Query 241 GATGACGATGAGGAAGACGGAGAGGTGAATAGTTAT-GG--G-----AGAGA-------C 285
| | ||| ||| ||||| |||||||||||||||||| || | ||||| |
Sbjct 271 GGTCACGTTGACGAAGATGGAGAGGTGAATAGTTATCGGAAGTGGCCAGAGAGGAGAGAC 330
Query 286 GGCGAAAAGCTGACAGTTGATTCATCTTCGA-GG----T---------T-GATGAGTGAG 330
|||||||| |||||||||||||||||||||| || | | ||||||||||
Sbjct 331 GGCGAAAATCTGACAGTTGATTCATCTTCGACGGGAAATGACGAGAGGTTGATGAGTGAG 390
Query 331 ATTGAAAAAAGTCGAATGTTTTGGGAAGCTTGTTTGGCTTCTTAA 375
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 391 ATTGAAAAAAATCGAATGTTTTGGGAAGCTTGTTTGGCTTCTTAA 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5