BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324725
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63020.1 | Symbols: | Protein of unknown function (DUF3049)... 778 0.0
> AT3G63020.1 | Symbols: | Protein of unknown function (DUF3049)
| chr3:23294425-23295039 FORWARD LENGTH=615
Length=615
Score = 778 bits (421), Expect = 0.0
Identities = 572/638 (90%), Gaps = 37/638 (6%)
Strand=Plus/Plus
Query 10 ATGACGTCATCCTCTACGATTCTCACCGGAGA-AGACGATGAAGAACACCGCACGCT-GT 67
|||||||||||||||||||||||||||||||| | | |||||||||||||||||| | ||
Sbjct 1 ATGACGTCATCCTCTACGATTCTCACCGGAGATATA-GATGAAGAACACCGCACG-TCGT 58
Query 68 C-TTCGGCTGAGGACGACACGCCTACGCATTCTCATCGACGGCGGTGGAGCACTCC-GGT 125
| | ||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| | |
Sbjct 59 CAAT-GGCAGAGGAAGACACGCCTACGCATTCCCATCGACGGCGCTGGAGCACTCCTGTT 117
Query 126 GAATTCCGGAGGGGAATCTCTTCAGAGCTTCTCCGTGAGCAGATCTC------T---ATC 176
| ||||||| || ||| ||||||| ||||| |||||||||||||||| | |||
Sbjct 118 G-ATTCCGGCGGCGAACCTCTTCAAAGCTTATCCGTGAGCAGATCTCTAGAGATAAAATC 176
Query 177 AGATCACGAGAATCCCGACGACGAGTGCAGCAGGGAACATAGAGGTGTGTCTGGAGTTAA 236
||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 177 AGACCACGAGAATCCCGACGACGAGT---GCAGGGAACATAGAGGTGTGTGTGGAGTTAT 233
Query 237 TCTTGACGAATATTTCTCGTGCTCATCGGAAAATAACAGTTATAGTTTCTATCTAGGAGG 296
||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||
Sbjct 234 TCTTGACGAATATTTCTCGTGTTCTTCGAAAAATAACAGTTACAGTTTCTATCTAGGAGG 293
Query 297 GAAGATATCGCCGTGGGGACCGTATGGACCGCCGCTGCTAACGGAGTCGTCGAGATCAAA 356
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 294 GAAGATATCGCCGTGGGGACCGTATGGACCGCCGCTGCTGACGGA---GTCGAGATCAAA 350
Query 357 CGCGCCGTCGCCGCGTGGAGAAGAGAGGAGAGGAAGAAGCGTGACGAAGAAGCGAGATCT 416
||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 351 GGCGCCGTCGCCGC------------GGAGAGGAAGAAGCGTGACGAGGAAGCGAGATCT 398
Query 417 GCCACCATTTTTGACGACACTGGATTGTAACGGACGGCCGAGATTTCATCACAGGAGAGT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GCCACCATTTTTGACGACACTGGATTGTAACGGACGGCCGAGATTTCATCACAGGAGAGT 458
Query 477 GAGAAGCGAAGGAAGGCTAGAGATTGCCAGCGTGGCAGTAGATTCACCGGAGATCGTTAG 536
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GAGAAGCGAAGGACGGTTAGAGATTGCCAGCGTGGCAGTAGATTCACCGGAGATCGTTAG 518
Query 537 TGTTCG-GGGAAGAGAAGGACTAAGAATCGGAACAGTGAGAATCAGTCAACAAAACGACG 595
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTTCGTGGGA-GAGAAGGACTAAGAATCGGAACAGTGAGAATCAGTCAACAAAACGACG 577
Query 596 AAGGAGAAGATGATGATGATGAGAAACAGAATCACTGA 633
|| |||||||||| |||| || |||||||||||||||
Sbjct 578 TAGTAGAAGATGATAATGAAGATAAACAGAATCACTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5