BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324733
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63080.1 | Symbols: ATGPX5, MEE42, GPX5 | glutathione peroxi... 821 0.0
AT2G48150.1 | Symbols: ATGPX4, GPX4 | glutathione peroxidase 4 ... 394 5e-109
> AT3G63080.1 | Symbols: ATGPX5, MEE42, GPX5 | glutathione peroxidase
5 | chr3:23309737-23311386 FORWARD LENGTH=1132
Length=1132
Score = 821 bits (444), Expect = 0.0
Identities = 497/523 (95%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGCTTCTAT-ATCATCATCAGTGTCCGAGAAATCAATCCATCAATTCACCGTCAA 59
||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 425 ATGGGTGCTTC-ATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAA 483
Query 60 GGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTATATCAAGGGAAAGTGTTGCTCGTCGT 119
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 484 GGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTGCTCGTCGT 543
Query 120 CAATGTCGCTTCTAAATGCGGATTCACGGAATCCAATTATACCCAGCTGACGGAACTTTA 179
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 544 CAACGTCGCTTCTAAATGCGGATTCACGGAGTCCAATTACACCCAGCTGACGGAACTTTA 603
Query 180 CCGGAAATATAAAGATCAAGGGTTTGTGATATTGGCCTTTCCTTGCAACCAGTTTCTGTA 239
||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||
Sbjct 604 CCGGAAATATAAAGATCAAGGTTTTGTGGTATTGGCGTTTCCTTGCAACCAGTTTCTGTC 663
Query 240 CCAAGAGCCTGGCACCAGCCAAGATGCTCATCAATTTGCCTGTACTCGGTTTAAGGCCGA 299
||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||| ||
Sbjct 664 CCAAGAGCCTGGCACCAGCGAAGAGGCTCATCAATTTGCTTGTACTCGCTTTAAGGCTGA 723
Query 300 ATACCCCGTTTTCCAAAAGGTGCGTGTCAATGGACAAAACGCTGCACCAGTCTACAAATT 359
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 724 ATACCCTGTTTTCCAAAAGGTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATT 783
Query 360 CCTCAAATCTAAGAAACCCTCTTTTCTTGGAAGTCGTATCAAATGGAACTTCACCAAGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CCTCAAATCTAAGAAACCCTCTTTTCTTGGAAGTCGTATCAAATGGAACTTCACCAAGTT 843
Query 420 CTTGGTCGGCAAAGATGGCCAAGTCATTGATCGTTATGGCACAACTGTGCCTCCTCTATC 479
|||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 844 CTTGGTCGGCAAAGATGGTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATC 903
Query 480 CATCCAGAAAGACATCGAGAAAGCCCTTGCACAAGTATTATGA 522
||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 904 CATCCAGAAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGA 946
> AT2G48150.1 | Symbols: ATGPX4, GPX4 | glutathione peroxidase
4 | chr2:19687962-19689173 REVERSE LENGTH=734
Length=734
Score = 394 bits (213), Expect = 5e-109
Identities = 398/487 (82%), Gaps = 14/487 (3%)
Strand=Plus/Plus
Query 29 CCGAGAAATCAATCCATCAATTCACCGTCAAGGATAGCTCCGGCAAGGAGGTTG-ACCTA 87
|||||| ||| ||||||||||||| || |||||||||||||||||||| || | |
Sbjct 97 CCGAGAGATCCGTCCATCAATTCACTGTAAAGGATAGCTCCGGCAAGGA-CCTGAATATG 155
Query 88 AGCGTATATCAAGGGAAAGTGTTGCTCGTCGTCAATGTCGCTTCTAAATGCGGATTCACG 147
||| | || ||||||||||| | ||| |||||||||| ||||| |||||||| |||||
Sbjct 156 AGCATTTACCAAGGGAAAGTCCTCCTCATCGTCAATGTTGCTTCCAAATGCGGTTTCACC 215
Query 148 GAATCCAATTATACCCAGCTGACGGAACTTTACCGGAAATATAAAGATCAAGGGTTTGTG 207
||| | || ||||| ||||| || ||||||||||||||||| || || |||| |||| |
Sbjct 216 GAAACAAACTATACACAGCTCACCGAACTTTACCGGAAATACAAGGACCAAGATTTTGAG 275
Query 208 ATATTGGCCTTTCCTTGCAACCAGTTTCTGTACCAAGAGCCTGGCACCAGCCAAGATGCT 267
|| ||||| || ||||||||||||||||| ||||| ||||| ||||| || ||||| |||
Sbjct 276 ATCTTGGCATTCCCTTGCAACCAGTTTCTATACCAGGAGCCCGGCACAAGTCAAGAGGCT 335
Query 268 CATCAATTTGCCTG-TACTCGGTTTAAGGCCGAATACCCCGTTTTCCAAAAGGTGCGTGT 326
||| |||||||||| | || ||||||||||||||||| |||||||||||||| || ||
Sbjct 336 CATGAATTTGCCTGCGA-ACGCTTTAAGGCCGAATACCCTGTTTTCCAAAAGGTACGCGT 394
Query 327 CAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCTAAG-AAACCCTCTTTTC 385
|| || |||||||| |||||| |||| |||||||| || | ||| |||||| | ||||
Sbjct 395 AAACGGTCAAAACGCAGCACCAATCTATAAATTCCTTAAGGC-AAGTAAACCCACCTTTC 453
Query 386 TTGGAAG-T-C-GTATCAAATGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCCAAG 442
||| | | | | || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 454 -TGG--GTTCCAGAATTAAGTGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCTTAG 510
Query 443 TCATTGATCGTTATGGCACAACTG-TGCCTCCTCTATCCATCCAGAAAGACATCGAGAAA 501
| ||||||||||||||||| | || | | || ||||| ||| ||||||||||| |||||
Sbjct 511 TGATTGATCGTTATGGCACGA-TGGTTACACCGCTATCAATCGAGAAAGACATCAAGAAA 569
Query 502 GCCCTTG 508
|| ||||
Sbjct 570 GCTCTTG 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5