BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324745
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63210.1 | Symbols: MARD1 | Protein of unknown function (DUF... 1099 0.0
> AT3G63210.1 | Symbols: MARD1 | Protein of unknown function (DUF581)
| chr3:23353615-23355160 REVERSE LENGTH=1450
Length=1450
Score = 1099 bits (595), Expect = 0.0
Identities = 743/810 (92%), Gaps = 27/810 (3%)
Strand=Plus/Plus
Query 1 ATGCTTAGAAACAAACCTAGAGCTGCCGTGAC--C-AAGAAACAAACATCTCTATTAATG 57
||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||
Sbjct 255 ATGCTTAGAAACAAACCTAGAGCAGCCGTGACGACTAAGAAACAAACATCTCTGTTAATG 314
Query 58 GCTGATCAACCCCCACCCT-CAAAGCCTAACACTTGCCACTGCTCATCATCTCTCTTTAG 116
||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 315 GCTGATCAACCTCCA-CCTCCAAAGCCTAACACTTGCCACTGCTCACCATCTCTCTTTAG 373
Query 117 CTCTCCAAAGTTTAGGTTTTTCACTTCAAAGATGATGAGT-ACTCCTTTTGACTCTGATT 175
|||||| |||||||||||||||||||| |||||||||| | ||||| |||||||||||||
Sbjct 374 CTCTCCCAAGTTTAGGTTTTTCACTTCTAAGATGATGA-TGACTCCCTTTGACTCTGATT 432
Query 176 TCTCCCTCGTCAGCCCTACGTCGATCCTCGAAGCTAACCCATCCATCTTCTCCTCCAAAA 235
|||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 433 TCTCACTCGTTAGCCCTACGTCTATACTCGAAGCTAACCCATCCATCTTCTCCTCCAAAA 492
Query 236 TCCCTAAACCCGTTTCCTATTTCGAGCCCACTATCCCTAATCCCCAACGTTTTCACACAG 295
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 493 ACCCTAAACCCGTTTCCTATTTCGAGCCAACTATCCCTAATCCCCAGCGTTTTCACTCTC 552
Query 296 CAGACGTCTTTGGCCTCGCCGATCTCGT-CAAGTACGCAGACAGTAACAGAGACCACTCG 354
|||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 553 CAGACGTCTTTGGCCTAGCCGATCTCGTGAAAG-ACGGAGACAGTAACAGAGACCACTCT 611
Query 355 AGGAAACCTGTCAACAAGATGGTCCTTTTCGGGTCGAAGCTCAGAGTCCAGATCCCATCA 414
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 612 AGAAAACCTGTCAACAAGATGGTCCTTTTCGGGTCAAAGCTCAGAGTCCAGATCCCATCA 671
Query 415 ---GCTGATTTTGGAACTAAAACCGGCATGAGATATCCTGCTCATGGACAGGGACAACTC 471
|||||||||||||||||||||||||| ||||||||| || || || || |
Sbjct 672 TCAGCTGATTTTGGAACTAAAACCGGCATCAGATATCCTCCT--TGT-CA---ACT--T- 722
Query 472 AGTCCTTGTGTCCAAACGAAGGTCTTAGCCGTGAGCGAGATTGACCACACGGAGGACTAC 531
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 723 AGTCCTTGTGTCCAAACGAAGGTCTTAGCAGTGAGCGAGATTGACCAGACGGAGGACTAC 782
Query 532 ACGCGCGTCATATCCCACGGTCCAAACCCAACCATCACTCATATCTTCGACAACTCTGTT 591
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 783 ACGCGCGTCATCTCTCACGGTCCTAACCCAACCATCACTCATATCTTCGACAACTCTGTT 842
Query 592 TTCGTGGAGGCTACTCCTTTTTGCGCTGTTCCTTTACACCCACCACCAGCCATGGAGACC 651
||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||
Sbjct 843 TTCGTGGAGGCTACTCCTT---GCTCTGTTCCTTTAC-CCCA--ACCAGCCATGGAGACC 896
Query 652 AAGCGCACGGAGAGTTTTCTAAGCTATTGCTACACCTGCAAGAAGAATCTTGACCAGAAA 711
||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 897 AAGAGCACCGAGAGTTTTCTAAGCCGTTGCTTCACCTGCAAGAAGAATCTTGACCAGAAA 956
Query 712 CAGGACATCTATATATACAGAGGAGAGAAAGGTTTTTGCAGCAGCGAGTGCAGGTACCAG 771
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAGGACATCTACATATACAGGGGAGAGAAAGGTTTTTGCAGCAGCGAGTGCAGGTACCAG 1016
Query 772 GAGATGCTTCTTGATCAAATGGAGACCTAG 801
||||||||||||||||||||||||||||||
Sbjct 1017 GAGATGCTTCTTGATCAAATGGAGACCTAG 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5