BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324760

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63360.1 | Symbols:  | defensin-related | chr3:23401257-2340...   405    1e-112


> AT3G63360.1 | Symbols:  | defensin-related | chr3:23401257-23401591 
REVERSE LENGTH=258
Length=258

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 245/258 (95%), Gaps = 0/258 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGAAGACGATCAGCTTCTCAGCGATTATCCTCGTATTCTTATTGGTTTCCACAGGA  60
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  1    ATGGGGAAGACGATCAGCTTCTCAGCCATAATCCTCGTATTCTTATTGGTTTCCACAGGA  60

Query  61   CTAATGGAGCAAGGAGACGCTCAAGCGCAAAGGTGTCAGTGGGAGTGCAAGCTTCTACCA  120
             | ||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct  61   TTGATGAAGCAAGGAGACGCGCAAGCGCAAAAGTGTGAGTGGGAGTGCAAGCTTCTACCA  120

Query  121  AACTTCCCTTGCTGGTTAAAAGGTGCGGGAGAAGGCCTCTGCGACAACTTGTGCAAGTAC  180
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  AACTTCCCGTGCTGGTTAAAAGGTGCGGGAGAAGGCCTTTGCGACAACTTGTGCAAGTAC  180

Query  181  GAAGGTGCCATTAGCGGCGTTTGCGTCTCTGACCCCCACCGCTGCCTCTGTCGCAATCCC  240
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  181  GAAGGAGCCATTAGCGGCGTTTGCGTCTCTGACCCCCACCGCTGCCTCTGTCGCAATCGC  240

Query  241  AGGCCCGGCTGCTCCTGA  258
            | ||||||||||||||||
Sbjct  241  AAGCCCGGCTGCTCCTGA  258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5