BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324761
Length=3018
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-l... 3395 0.0
> AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:23402076-23405991 FORWARD LENGTH=3004
Length=3004
Score = 3395 bits (1838), Expect = 0.0
Identities = 2078/2196 (95%), Gaps = 7/2196 (0%)
Strand=Plus/Plus
Query 345 AGAGAAAGTGTTTGACGAAATGCGTGACAGAACTGCCTTTGCCTGGAATGCGTTGATCGG 404
||||||||||||||||||||||| |||||||||||||||||| |||||| | |||| ||
Sbjct 409 AGAGAAAGTGTTTGACGAAATGCCTGACAGAACTGCCTTTGCGTGGAATACCATGATTGG 468
Query 405 AGCCTATGTTTCGAATGCTGAACCTGCTTCCGCTCTCT-TTATCTACCGGAATATGCGTG 463
||| ||||||||||||| |||||||||||||||||| | | ||||| ||||||||||||
Sbjct 469 AGCTTATGTTTCGAATGGTGAACCTGCTTCCGCTCT-TGCTCTCTACTGGAATATGCGTG 527
Query 464 TGGAGGGCGTTCCTCTCGATCTTTACTCTTTTCCTGTCTTGCTTAAAGCCTGCGGCAAAC 523
|||||||||||||||||| ||||| ||||||||| | ||||||||||||||||| |||||
Sbjct 528 TGGAGGGCGTTCCTCTCGGTCTTTCCTCTTTTCCCGCCTTGCTTAAAGCCTGCGCCAAAC 587
Query 524 TTCGAGACATCAGGAGTGGCACTGAGCTTCATTGTATGCTCGTTAAACTTGGCTTCAATT 583
|| |||| ||| | |||||| |||||||||||| | | |||||||||||||||| | |||
Sbjct 588 TTAGAGATATCCGAAGTGGCTCTGAGCTTCATTCTCTCCTCGTTAAACTTGGCTACCATT 647
Query 584 CAACAGGTTTTATCGTCAATGCGTTGGTTTCCATGTATGCTAAG-ACTGATCACCTAAGC 642
|||| ||||||||||||||||||||||||||||||||||||||| || ||| |||| |||
Sbjct 648 CAACTGGTTTTATCGTCAATGCGTTGGTTTCCATGTATGCTAAGAAC-GATGACCTTAGC 706
Query 643 GCAGCTAGGCGTCTCTTTGACGGATCCCAAGAGAAAGGAGATGCTGTTCTCTGGAATTCT 702
|| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 707 GCTGCAAGGCGTCTGTTTGACGGATTCCAAGAGAAAGGAGATGCTGTTCTCTGGAATTCT 766
Query 703 ATTTTGTCTTCATATTCCACGTCTGGGAAATCTCTGGAGACATTACAATTATTCAGAGAA 762
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 767 ATTTTGTCTTCATATTCCACGTCTGGGAAATCTCTCGAGACTTTAGAATTATTCAGAGAA 826
Query 763 ATGCAAATGACTGGTCCTGCCTCCAACAGCTACACTATTGTTTCTGCTCTCACAGCCTGT 822
||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 827 ATGCACATGACTGGCCCTGCCCCCAACAGCTACACCATTGTTTCTGCTCTCACAGCCTGT 886
Query 823 GAAGGTTTTTCATATGCAAAGCTAGGGAAAGAGATCCACGCTGCTGTCCT-GAA--ATCA 879
|| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 887 GACGGTTTTTCATATGCAAAGCTAGGGAAAGAGATCCACGCTTCTGTCCTCAAATCATCA 946
Query 880 ACTCACTCTTTTGAAGTATATGTGTGCAACGCCTTGATTGCTATGTATGCCAGGTGTGGT 939
|||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 947 ACTCACTCTTCTGAATTATATGTGTGCAACGCCTTGATTGCAATGTATACCAGGTGTGGT 1006
Query 940 AAAATGCTTGAGGCAGGAAGGATCCTTCGTCTGATGAATAACGCTGACGTTGTCACATGG 999
||||||| | |||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1007 AAAATGCCTCAGGCAGAAAGGATCCTTCGTCAGATGAATAACGCTGATGTTGTCACATGG 1066
Query 1000 AATTCTCTGATTAAGGGATATGTACAGAATCTCATGTACAAGGAGGCATTACAGTTCTTT 1059
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1067 AATTCTCTGATTAAGGGATATGTACAGAATCTCATGTACAAGGAGGCTTTAGAGTTCTTT 1126
Query 1060 TGTGATATGATCGCTGCTGGCCACAAACCCGACGAGGTTTCATTGACCAGTGTCATTGCA 1119
| ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 1127 TCTGATATGATCGCTGCTGGCCACAAATCCGACGAGGTTTCAATGACCAGCATCATTGCA 1186
Query 1120 GCGTCAGGAAGATTAAGCAATCTGTTGGCAGGAATGGAATTGCACGCTTACGTGATTAAA 1179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1187 GCGTCAGGAAGATTAAGCAATCTCTTGGCAGGAATGGAATTGCACGCTTACGTGATTAAA 1246
Query 1180 CATGGCTGGGATTCCAATTTGCTGGTTGGGAATACGTTGATAGATATGTATTCAAAGTGC 1239
|||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1247 CATGGCTGGGATTCTAATTTGCAGGTTGGGAATACGTTGATTGATATGTATTCAAAGTGC 1306
Query 1240 AACCTCACATGTTACATGGGCCGTGCGTTTCTTATGATGCATGAAAAAGATCTTATTTCA 1299
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1307 AACCTCACATGTTACATGGGCCGTGCGTTTCTTAGGATGCATGACAAAGATCTTATTTCA 1366
Query 1300 TGGACTACAATCATTGCTGGTTATGCCCTGAATGATTGTCATGTAGAGGCCTTACAACTC 1359
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1367 TGGACTACGGTCATTGCCGGTTATGCCCAGAATGATTGTCATGTAGAGGCCTTAGAACTC 1426
Query 1360 TTCCGGGATGTTGCTAAGAAAAGGATGGAGATTGATGAAATGATGCTGGGAAGCATCCTT 1419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1427 TTCCGGGATGTTGCTAAGAAAAGGATGGAGATTGATGAAATGATCCTGGGAAGCATCCTT 1486
Query 1420 CGAGCTTGTAGTGTGCTGAAATCCATGCTCATTGTCAAAGAAATTCATTGTCACATTTTG 1479
||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1487 CGAGCTTCTAGTGTACTGAAATCCATGCTCATTGTCAAAGAAATCCATTGTCACATTTTG 1546
Query 1480 AGAAAAGGTTTAATTGATACTGTGATACAGAATGAGTTGGTAGATGTTTACGGAAAATGC 1539
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1547 AGAAAAGGTTTACTTGATACTGTGATACAGAATGAGTTGGTAGATGTCTACGGAAAATGC 1606
Query 1540 AGGAACATGGGCTATGCTTCCCGAGTATTTGAATCAATCAAAGGTAAAGATGTTGTCTCT 1599
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1607 AGGAACATGGGCTATGCTACTCGAGTATTTGAATCAATTAAAGGTAAAGATGTTGTCTCT 1666
Query 1600 TGGACGAGCATGATTTCGTCTAGTGCTCTTAATGGTAACGAAAATGAGGCTGTTGAACTC 1659
||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1667 TGGACAAGCATGATTTCGTCTAGTGCTCTTAATGGTAATGAAAGCGAGGCTGTTGAACTC 1726
Query 1660 TTTCGACGCATGGCTGAAACTGGTTTGTTAGCTGATTCTGTAGCATTGTTGTGTATACTG 1719
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1727 TTTCGACGCATGGTTGAAACTGGTTTGTCAGCTGATTCTGTAGCATTGTTGTGTATACTG 1786
Query 1720 TCAGCTGCAGCAAGTTTATCTGCCCTCAAGAAAGGGAGGGAAATTCATGGCTACTTACTC 1779
||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||
Sbjct 1787 TCAGCTGCAGCAAGTTTATCTGCACTCAATAAAGGGAGAGAAATTCATTGCTACTTACTC 1846
Query 1780 CGGAAGGGTTTTTGCCTAGAGGGGTCCATTGCAGTTGCAGTTGTTGACATGTATGCATGC 1839
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 CGAAAGGGGTTTTGCCTAGAGGGGTCCATTGCAGTTGCAGTTGTTGACATGTATGCATGC 1906
Query 1840 TGTGGAGATTTACAGAGTGCAAAGGCTGTATTTGACCGGATAGAAAGGAAAGGTTTGCTA 1899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TGTGGAGATTTACAGAGTGCAAAGGCTGTATTTGACCGGATAGAAAGGAAAGGTTTGCTG 1966
Query 1900 CAATACACAAGTATGATCAATGCATATGGAATGCACGGCTGCGGAAAAGCATCTGTTGAG 1959
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1967 CAATACACAAGTATGATCAATGCATATGGAATGCATGGCTGCGGAAAAGCAGCTGTTGAG 2026
Query 1960 TTGTTCAATAAAATGAGGCATGAAAACGTCTCACCCGATCACATTTCATTTCTGGCACTT 2019
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2027 TTGTTCGATAAAATGAGGCACGAAAACGTCTCGCCCGATCACATTTCATTTCTGGCACTT 2086
Query 2020 CTTTATGCGTGCAGCCATGCAGGTCTGCTTGACGAGGGTAGAAGATTTCTCAAGATCATG 2079
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2087 CTTTATGCGTGCAGCCATGCAGGTCTGCTTGACGAGGGTAGAGGGTTTCTCAAGATCATG 2146
Query 2080 GAACTTGAATATAAATTGGAACCATGGCCTGAACATTACGTGTGTCTGGTTGACATGTTG 2139
|||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2147 GAACATGAGTATGAATTGGAACCATGGCCTGAACATTACGTGTGTCTGGTTGACATGCTG 2206
Query 2140 GGTCGTGCAAATTGTGTAGTGGAAGCCTTTGAATTCGTCAAAATGATGAAAACAGAACCA 2199
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2207 GGTCGTGCAAATTGTGTAGTGGAAGCCTTTGAATTCGTTAAAATGATGAAAACAGAACCG 2266
Query 2200 ACTACAGAAGTCTGGTGTGCACTCCTTGCGGCATGCCGATCTCACTCAGAGAAAGAAATT 2259
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2267 ACTGCAGAAGTCTGGTGTGCACTCCTTGCGGCATGCCGATCTCACTCAGAGAAAGAAATT 2326
Query 2260 GGAGAGATAGCTGCTCAGAGGCTTCTTGAGCTAGAACCTAAGAATCCGGGAAATCTTGTG 2319
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2327 GGAGAGATTGCTGCTCAGAGGCTCCTTGAGCTAGAACCTAAGAATCCGGGAAATCTTGTG 2386
Query 2320 CTTGTATCTAATGTCTTTGCTGAACAAGGAAGATGGAACGATGTAGAAAAAGTGAGGGCA 2379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 CTTGTATCTAATGTCTTTGCTGAACAAGGAAGATGGAACGATGTAGAAAAAGTGAGGGCA 2446
Query 2380 AAAATGAAAGCAAGTGGAATGGAGAAACAACCTGGATGTAGTTGGATTGAGATGGACGGC 2439
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2447 AAAATGAAAGCAAGTGGAATGGAGAAACACCCTGGATGTAGTTGGATTGAGATGGACGGC 2506
Query 2440 AAGGTTCATAAATTTACAGCAAGAGACAAGTCTCACCCAGAGACCAAAGAGATATATGAG 2499
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2507 AAGGTTCATAAATTTACAGCCAGAGACAAGTCTCACCCAGAGAGCAAAGAGATATATGAG 2566
Query 2500 AAATTGTCCGAGGTTACTAGGAAGTTGGAGAGGGAA 2535
||||||||||||||||||||||||||||||||||||
Sbjct 2567 AAATTGTCCGAGGTTACTAGGAAGTTGGAGAGGGAA 2602
Score = 243 bits (131), Expect = 1e-62
Identities = 233/279 (84%), Gaps = 20/279 (7%)
Strand=Plus/Plus
Query 69 TAACACGATGTACTCTGCTTCGGCCATTTCGTTACCAACGTTTCGTCTCCATTGTAGTAT 128
||||| |||||||||||||||||| |||||||| |||| | ||||||| |||||||||||
Sbjct 40 TAACATGATGTACTCTGCTTCGGCGATTTCGTTTCCAAGGGTTCGTCTGCATTGTAGTAT 99
Query 129 TCCGACAGAGCTATCATCATGCCGTCCCAAGTTGAGCCGAATTCAGACAAACCCATCCAT 188
||||||||||| |||| ||||| || | || |||| |||| | || ||
Sbjct 100 TCCGACAGAGC---CATCCTGCCG----GAG--AAACC-CATTCCGACAGA-GCA---AT 145
Query 189 CGGGAAGCCCGTCCAAGTCCCTTCTCCGAAGCTCGCTTCTTTCGATGGAGGCCTTAA-TG 247
| ||||||||||||||||||||||||||||||||| |||||| |||| ||| || ||
Sbjct 146 C----AGCCCGTCCAAGTCCCTTCTCCGAAGCTCGCTTGTTTCGACGGAGTCCT-AACTG 200
Query 248 AAGCTTTTCAACGGCTGGACGTCAACGGAAACAACTCTCCAATCGAAGCCTATGCCTACC 307
|||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||
Sbjct 201 AAGCTTTTCAACGGCTGGACGTCAGCGAAAACAACTCTCCAGTCGAAGCCTTTGCCTACG 260
Query 308 TTCTCGAGCTTTGTGGTAAAAGCAGAGCTCTCTCTCAAG 346
|||||||||||||||||||| | |||||| |||| ||||
Sbjct 261 TTCTCGAGCTTTGTGGTAAACGTAGAGCTGTCTCACAAG 299
Score = 137 bits (74), Expect = 5e-31
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 2794 TGTGGTCTTTTAGATACATGGAGTCAAACTAAGAATGGACCTTGGCGAAAGCTTCTTCAT 2853
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 TGTGGTCATTTAGATACATGGAGTCAAACTAAGAATGGACCTTGGCGAAAGCTTCTTCAC 2868
Query 2854 GGTCAAGATTTAAAATCAGG 2873
||||||||||||||||||||
Sbjct 2869 GGTCAAGATTTAAAATCAGG 2888
Score = 108 bits (58), Expect = 4e-22
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 2936 GCTTCTTTAATTCGTGGTGTCTCTCTCCTTTTTACCCAACCATCTCTTTAAATTTTCAAC 2995
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 2888 GCTTCTTTAATTCGTGGTGTCTCTCTCCTTTTTACCCAACCATCTCTTAAAATTTTTAAC 2947
Query 2996 ATCT 2999
||||
Sbjct 2948 ATCT 2951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150049326513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5