BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324763
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63390.1 | Symbols: | unknown protein; Has 30201 Blast hits... 682 0.0
> AT3G63390.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23411166-23411968
REVERSE LENGTH=803
Length=803
Score = 682 bits (369), Expect = 0.0
Identities = 478/527 (91%), Gaps = 21/527 (4%)
Strand=Plus/Plus
Query 1 ATGATGGACGAT---GATGATTACTCGGCGGCTGCGACTACCGTCGTCTTCGACCGTCCG 57
|||||||| ||| ||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 26 ATGATGGAAGATGACGATGATTTCTCGGCGGCTGCGACTACCGTTGTGTTCGACCGTCCG 85
Query 58 ATTCCGCTGCTCCGGGGACCTGTACCCTCCGGTGGTTCATACGTTCTAGCTTTCCGATCC 117
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 86 ATTCCGCTGCTCCGGGGACCTGTACCCTCCGGTGGTTCTTATGTTCTAGCTTTCCGATCA 145
Query 118 CTGGATTCATGGTCAGCCGCTTTCAAGCGTTGCGAAACCCTAATCAAGGACCAGTGCCAG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 146 CTGGATTCATGGTCAGCCGCTTTCAAGCGTTGCGAAACCCTAATCAAGGACCAGTGCGAG 205
Query 178 GAAGGTGCTAGAATTGGGTGCGCCGTCTCCGCCTCCAACAACTGTAAGCCGCCGTGGTGG 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GAAGGTGCTAAAATTGGGTGCGCCGTCTCCGCCTCCAACAACTGTAAGCCGCCGTGGTGG 265
Query 238 CGGGGCTCCGGTG---ACATGAGGGAGCGGGACAAGTGCGAAGAGCGGGAATTCCAGG-C 293
||||| || |||| |||||||||| || || ||||||||||||||||||||| ||| |
Sbjct 266 CGGGGATCTGGTGGTGACATGAGGGAACGAGAGAAGTGCGAAGAGCGGGAATTCGAGGGC 325
Query 294 ATGTGTGGCTGCCTCCATGGGCAAGTGCGCTGCTTTCGCCAAAGACAAGTGCTCTGGTGC 353
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 -TGTGTGGCTGCCGCCAAGGGCAAGTGCGCTGCTTTCGCCAAAGACAAGTGCTCTGGTGC 384
Query 354 GTTTTTAGATGCGCGAATCTCCAAGGA---GC---TTGAGGGATTGGTGTGCCTAGCTTC 407
|||||||||||||||||| ||||||| | |||||||||||||||| ||||||||
Sbjct 385 CTTTTTAGATGCGCGAATCGCCAAGGACAAGGAGGTTGAGGGATTGGTGTGGCTAGCTTC 444
Query 408 AATGCCGGAGCACAGCAGGTGGAGGGATCTCATGGGGATTGGT--T-CACTGCTTCTGCA 464
|||||||||| | |||||||||||||||||||||||| ||||| | |||||| ||||||
Sbjct 445 AATGCCGGAGGAAAGCAGGTGGAGGGATCTCATGGGGCTTGGTGGTTCACTGCGTCTGCA 504
Query 465 CACCACCAACTGCTGC---ACTGCCAGGGATCTTCTTCGTAA-CCAT 507
||||| |||||||||| || |||||||||||||||| ||| ||||
Sbjct 505 CACCAACAACTGCTGCTGCACAGCCAGGGATCTTCTTCTTAAACCAT 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5