BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324764
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63400.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1519 0.0
> AT3G63400.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:23412024-23415659 FORWARD
LENGTH=2084
Length=2084
Score = 1519 bits (822), Expect = 0.0
Identities = 1035/1129 (92%), Gaps = 50/1129 (4%)
Strand=Plus/Plus
Query 1 ATGAGTaaaaaaaaGAATCCTAATGTTTTCTTGGATGTCTCTATTGGTGGGGATCCCGTT 60
|||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 148 ATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTGGGGATCCCGTT 207
Query 61 CAACGGATTGTCATTGAGCTTTTTGCTGATGTTGTCCCCAAGACAGCCGAAAACTTCCGT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 208 CAACGGATTGTCATTGAGCTTTTTGCTGATGTTGTCCCCAAGACAGCGGAAAACTTCCGT 267
Query 121 GCCCTCTGCACAGGTGAGGCGGGAGTTGGAAAGGCCACTGGGAAGCCTCTACATTTCAAA 180
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 268 GCCCTCTGCACAGGTGAGGCGGGCGTTGGAAAGTCCACTGGGAAGCCTCTACATTTCAAA 327
Query 181 GGATCATCTTTCCATCGAGTTATCAAAGGATTCATGGCTCAGGGTGGTGACTTTTCCAAT 240
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 328 GGATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAGGGTGGTGATTTTTCCAAT 387
Query 241 GGAAATGGCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGATGAGAATTTTAGA 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 388 GGGAATGGCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGATGAGAACTTTAGA 447
Query 301 TTGGATCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGG 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGG 507
Query 361 TCCCAATTTTTTATACTTTTTAAACGCCAACCACATCTTGATGGGAAGCATGTTGTATTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TCCCAATTTTTTATACTTTTTAAACGCCAACCACATCTTGATGGGAAGCATGTTGTATTT 567
Query 421 GGCAAAGTCGTTGAGGGGATGGCAGTAATCAAGAAAATGGAACTTGTGGGGACGAGTGAT 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GGCAAAGTCGTTGAAGGGATGGCAGTAATCAAGAAAATGGAACTTGTGGGGACGAGTGAT 627
Query 481 GGGAAACCTACTAGCCCAGTTAAAATAATCGACTGTGGCGAAACGTCTCAGATAAGAGCA 540
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 628 GGGAAACCTACTAGCCCAGTCAAAATAATAGACTGTGGTGAAACGTCTCAGATAAGAGCA 687
Query 541 CATGATGCTGCTGAAAGAGAAAAAGGGAAATCGAAAAAATCAAACAAGGGCCTTTCTTCT 600
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 688 CATGATGCTGCTGAAAGAGAAAAAGGGAAATCGAAAAAATCAAACAAGAACTTTTCTCCT 747
Query 601 GGTGACATAT-T-----TGA--C--------C--GCaaaaaagaatcaaaggagaaaagg 642
|||||| ||| | ||| | | ||||||||||||| || |||||||||
Sbjct 748 GGTGACGTATCTGACCGTGAAGCTAAGGAGACACGCAAAAAAGAATCTAACGAGAAAAGG 807
Query 643 ataaagcgaaaaagaaTATACTCTTCGTCGGATTCATATAGCTCAAGTTCTGACTCAGAT 702
||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 808 ATAAAACGAAAAAGAAGATACTCTTCGTCAGATTCATATAGCTCAAGTTCCGACTCAGAT 867
Query 703 TCAGATTCGGAATCAGAAACATATTCATCCTCCTCCTATGAGTCTAGTTCTTCCAGTGAT 762
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 868 TCAGATTCGGAATCAGAAGCATATTCATCTTCCTCCTATGAGTCTAGTTCTTCCAGTGAT 927
Query 763 GGGAAGCATAGGAAGAGGAAGTCAACAA-AGAGACACAAAGGCCGACGCGGGGAAAGAAA 821
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 928 GGGAAGCATAGGAAGAGGAAGTCAACAACA-AGACACAAAGGCCGACGCGGGGAAAGAAA 986
Query 822 GATTAAAGGACGAAACGGGAAAAAGAAAGCTCGGCGAGATAGACAACCTCGGCGCAGAAG 881
|| ||||||||||| |||||||||||||||||||| ||||||| |||| | | |
Sbjct 987 GAGTAAAGGACGAAGCGGGAAAAAGAAAGCTCGGCCAGATAGAAAACC-------A-A-G 1037
Query 882 CACGGATAGTTTAAGTGACACGGAGAGTAGCAGCAGTTCTGATGATGAGAAAG----CCA 937
|||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1038 CACGAATAGTTCAAGTGACACGGAGAGTAGCAGCAGTTCTGATGATGAGAAAGTGGGCCA 1097
Query 938 C----C-A-AA-G-CAG--A---T--A-A-CGCTGATCAACGCGCCGACTTGGATGACTC 980
| | | || | ||| | | | | ||||||||||| |||| |||||||||||||
Sbjct 1098 CAAAGCCATAAAGTCAGTGAAAGTTGATAACGCTGATCAACACGCCAACTTGGATGACTC 1157
Query 981 ATTGAAATCAAGGAGCAGGAGCCCAATTCGTAGGACTAACCAAAACAGCAGAAGCAAAAG 1040
| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1158 AGTGAAATCAAGGAGCAGGAGCCCAATTCGTAGGAGAAACCAAAACAGCAGGAGCAAAAG 1217
Query 1041 TCCTAGTAGGAGCCCTGTGAGAGATCTAGGAAATGGAAGCAGAAGTCCT 1089
||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 1218 TCCTAGTAGGAGCCCTGTGAGAGTTCTTGGAAATGGAAACAGAAGTCCT 1266
Score = 985 bits (533), Expect = 0.0
Identities = 584/608 (96%), Gaps = 6/608 (1%)
Strand=Plus/Plus
Query 1031 GAAGCAAAAGTCCTAGTAGGAGCCCTGTGAGAGATCTAGGAAATGGAAGCAGAAGTCCTC 1090
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1253 GAAACAGAAGTCCTAGTAGGAGCCCTGTGAGAGATCTTGGAAATGGAAGCAGAAGTCCTC 1312
Query 1091 ATGAGAAGCCAACAGAGGGAACTGTGGGGAAATCTTCCAGAAGCCCATCTCCAAGTGGTG 1150
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1313 GTGAGAAGCCAACAGAGGAAACTGTGGGGAAATCTTTCAGAAGCCCATCTCCAAGTGGTG 1372
Query 1151 TGCCCAAGCGCATCCGAAAGGGGCGTGGGTTCACCGAACGCTATTCCTTTGCTCGGAAGT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TGCCCAAGCGCATCCGAAAGGGGCGTGGGTTCACCGAACGCTATTCCTTTGCTCGGAAGT 1432
Query 1211 ACCATACGCCTTCTCCTGAGCGTTCTCCTCCTAGACATTGGCCTGACAGGAGAAGCTTTC 1270
||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1433 ACCATACTCCTTCTCCTGAGCGTTCTCCTCCTAGACATTGGCCTGACAGAAGAAACTTTC 1492
Query 1271 AGGATAGGAACAGGGATAGGTATCCGAGCAACAGAAGTTACTCTGAGCGCTCACCGAGGG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 AGGATAGGAACAGGGATAGGTATCCGAGCAACAGAAGTTACTCTGAGCGCTCACCGAGGG 1552
Query 1331 GACGCTTTAGAAGCCCAACCAGAAGAAGGAGCCCTCCAAGGTACAACCGGAGGAGAAGGA 1390
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GACGCTTTAGAAGCCCACCCAGAAGAAGGAGCCCTCCAAGGTACAACCGGAGGAGAAGGA 1612
Query 1391 GCACTTCTCGGAGTCCAGATGGGTACCGTAGACGCTTGAGAGACGGAAGCAGGAGCCAGA 1450
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1613 GCACTTCTCGGAGTCCAGATGGGTACCGTAGACGATTGAGAGACGGAAGCAGGAGCCAGA 1672
Query 1451 GTCCAAGGCATC--A----TAGCCAGAGCCCTAGAAAGAGGCAGCCAATTAGCCAAGACC 1504
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GTCCGAGGCATCGTAGCCGTAGCCAGAGCCCTAGAAAGAGGCAGCCAATTAGCCAAGACC 1732
Query 1505 TTAAATCCCGTCTCGGGCCACAGAGATCCCCCATCAGAGGAGGACGCACCTCTCCTGCAG 1564
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TGAAATCCCGTCTCGGGCCACAGAGATCCCCCATCAGAGGAGGACGCACCTCTCCTGCAG 1792
Query 1565 GATCGCTCAGCCCTTCTCACTCATCATCTCCACCAGGACAGAGAGGTCTGGTTAGCTATG 1624
||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 1793 AATCACTCAGCCCTTCTCACTCACCTTCTCCACCAGGAAAGAGAGGTCTGGTTAGCTATG 1852
Query 1625 CGGATTGA 1632
||||||||
Sbjct 1853 CGGATTGA 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5