BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324777
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63530.1 | Symbols: BB, BB2 | RING/U-box superfamily protein... 1199 0.0
> AT3G63530.1 | Symbols: BB, BB2 | RING/U-box superfamily protein
| chr3:23456157-23458459 REVERSE LENGTH=1250
Length=1250
Score = 1199 bits (649), Expect = 0.0
Identities = 716/748 (96%), Gaps = 5/748 (1%)
Strand=Plus/Plus
Query 1 ATGAATGGAG---ATAGACCAGTGGAAGATGCTCATTACACGGAGACGGGTTTCCCTTAT 57
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 254 ATGAATGGAGATAATAGACCAGTGGAAGATGCTCATTACACGGAGACAGGTTTCCCTTAT 313
Query 58 GCTGCAACTGGCAGTTACATCGA-TTTCTATGGTGGTCCGGCTCAGGGGCCTCTAAACTA 116
||||| ||||| |||||||| || ||| ||||||||| |||||||||||||||| |||||
Sbjct 314 GCTGCTACTGGAAGTTACATGGACTTT-TATGGTGGTGCGGCTCAGGGGCCTCTTAACTA 372
Query 117 TGCTCATGCCGGAACTATGCATCCTCAGGACAATCTGTACTGGACCATGAATTCAAATGC 176
| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 373 CGATCATGCCGCAACTATGCATCCTCAGGACAATCTGTACTGGACCATGAATACCAATGC 432
Query 177 ATACAAGTTTGGGTTTTCAGGATCAGATAATGCTTCTTTCTATGGTTCTTATGACATGAA 236
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 433 ATACAAGTTTGGGTTTTCAGGATCAGATAATGCTTCTTTCTATGGTTCATATGACATGAA 492
Query 237 CGATCATTTATCGAGGATGTCCATAGGGAGAACAAATTGGGACTACCATCCCATGGTGAA 296
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 493 CGATCATTTATCGAGGATGTCCATAGGGAGAACAAATTGGGACTATCATCCCATGGTGAA 552
Query 297 CGTTGTTGATGATCCTGAAATCACAGTTACACGTTCTGTCCAAATCGGGGACACAGATGA 356
||||| |||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||
Sbjct 553 CGTTGCTGATGATCCTGAAAACACAGTTGCACGTTCCGTCCAAATCGGAGACACAGATGA 612
Query 357 GCACTCTGACGCTGAAGAATGCATTGCAAATGAGCATGATCCCGACAGTCCTCAGGTATC 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GCACTCTGAAGCTGAAGAATGCATTGCAAATGAGCATGATCCCGACAGTCCTCAGGTATC 672
Query 417 CTGGCAAGATGATATTGATCCTGATACAATGACCTATGAGGAATTAGTAGAGCTGGGGGA 476
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CTGGCAAGATGACATTGATCCTGATACAATGACCTATGAGGAATTAGTAGAGCTGGGGGA 732
Query 477 AGCAGTAGGAACAGAAAGCCGGGGGTTGTCTCAGGAACTCATAGAAACGCTTCCCACTAG 536
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 733 AGCAGTAGGAACAGAAAGCAGGGGGTTGTCTCAGGAACTCATAGAAACGCTTCCCACTAA 792
Query 537 AAAGTATAAGTTTGGGAGCATCTTCTCCAGGAAAAGAGCTGGGGAAAGGTGTGTGATATG 596
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 793 AAAGTATAAGTTTGGGAGCATCTTCTCCAGGAAAAGAGCTGGGGAGAGGTGTGTGATATG 852
Query 597 CCAGCTCAAGTACAAGATAGGGGAGAGGCAAATGAATCTGCCGTGCAAGCATGTGTATCA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CCAGCTCAAGTACAAGATAGGGGAGAGGCAAATGAATCTGCCGTGCAAGCATGTGTATCA 912
Query 657 TTCTGAATGCATTTCCAAATGGCTAAGCATCAACAAGGTTTGCCCAGTGTGCAACAGCGA 716
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 913 TTCTGAATGCATTTCCAAATGGCTAAGCATCAACAAGGTTTGCCCGGTGTGTAACAGCGA 972
Query 717 GGTCTTTGGAGAGCCCAGCATCCATTGA 744
||||||||| ||||||||||| ||||||
Sbjct 973 GGTCTTTGGGGAGCCCAGCATTCATTGA 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5