BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324780
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26880.1 | Symbols: AGL26 | AGAMOUS-like 26 | chr5:9457037-9... 913 0.0
AT3G43251.1 | Symbols: | Pseudogene of AT5G26880; tRNA/rRNA me... 300 2e-80
> AT5G26880.1 | Symbols: AGL26 | AGAMOUS-like 26 | chr5:9457037-9459230
REVERSE LENGTH=1411
Length=1411
Score = 913 bits (494), Expect = 0.0
Identities = 606/657 (92%), Gaps = 20/657 (3%)
Strand=Plus/Plus
Query 23 GTCTGAGCGTCATAGCTTCAAGGACGTTTCGTCTGCCGTCAAGTGGCCGTCT-TTTACCC 81
||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||
Sbjct 54 GTCGGAGCGTCATAGCTTCAAGGACGTTTCATCTGCGGTCAAGTGGCCGTCTATTT-CCC 112
Query 82 TCCCTTAGCTTAACTCATCTCAAGCGCAAGCTATCTCTCTCCATCACCTCGTTCTCTTCG 141
|| ||||||||||||||||||||| ||||||||||||||||||||| |||||| || ||
Sbjct 113 TCTCTTAGCTTAACTCATCTCAAGGGCAAGCTATCTCTCTCCATCAACTCGTTTTCCTCC 172
Query 142 AAGATTCA--CTC-T-C-CT-C-------T-G--T--GCGATTCAGATAAGGGAAATCCT 183
|||||||| ||| | | || | | | | |||| ||||||||| ||||||
Sbjct 173 AAGATTCAGTCTCATGCTCTCCGAGGAGTTGGTATAGGCGAGTCAGATAAGAAAAATCCC 232
Query 184 CTGCCGCGAGGGGCGGGAGAAGGAGTCAAGGAAGATGCGAGGAGTAAGCTGCTTCAAGTA 243
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 233 CTGCCGCGAGGGGCCGGAGAAGGAGTCAAGGAAGATGCGAGGAGTAAGCTGCTTCATGTA 292
Query 244 GTTTTGGTCTCTCCCCAGATTCCTGGGAATACAGGTTGCATTGCAAGAACATGTGCGGCC 303
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 293 GTTTTGGTCTCTCCTCAGATTCCTGGGAATACAGGTTGCATTGCAAGAACATGTGCTGCC 352
Query 304 TCAGCTGTTGGGCTGCATTTAGTTGGGCCATTAGGTTTTCAAGTGGATGACGCCAGAGTA 363
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 353 TCAGCTGTTGGTCTGCATTTAGTCGGGCCATTAGGTTTTCAAGTGGATGACGCCAGAGTT 412
Query 364 AAGCGAGCTGGTTTGGATTATTGGCCCTTTGTGGTTGTCAGAGCGCATAGCTCATGGGCT 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 AAGCGAGCTGGTTTGGATTATTGGCCCTTTGTGGTTGTCAAAGCGCATAGCTCATGGGCT 472
Query 424 GAGTTTCGAGAATATTTCAGGCAACAGGAGGGAGAAAAACGGATGATAGCTTTCACAAAA 483
||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 473 GAGTTTCAAGAATATTTCAGGCTTCAGGAGGGAGAAAAACGAATGATAGCTTTTACAAAA 532
Query 484 AGAGGAACAAGGATACATTCAGATTTCTCTTACCGACCAGGCGATTACCTCTTGTTCGGG 543
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 533 AGAGGAACAAGGATACATTCAGATTTTTCTTACCGATCAGGCGATTACCTCTTGTTCGGG 592
Query 544 TCAGAGACAAGCGGTCTACCTCCTGAAGCGCTGTCAGACTGCAAACACGAACCATATGGA 603
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 593 TCAGAGACAAGCGGTCTACCTCCTGAAGCGCTGTCAGACTGCAATCACGAACCATATGGA 652
Query 604 GGGGGGACCCTACGTATTCCGATGGTAGAAACGTATGTCAGATGTCTGAATCTTTCG 660
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 653 GGGGGGACCCTACGTATTCCCATGGTAGAAACGTATGTGAGATGTCTGAATCTTTCG 709
> AT3G43251.1 | Symbols: | Pseudogene of AT5G26880; tRNA/rRNA
methyltransferase (SpoU) family protein | chr3:15217858-15218346
REVERSE LENGTH=378
Length=378
Score = 300 bits (162), Expect = 2e-80
Identities = 303/364 (83%), Gaps = 38/364 (10%)
Strand=Plus/Plus
Query 1 ATGGAGAGTTGCGGTCGGAGCAGTCTGAGCGTCATAGCTTCAAGGACGTTTCGTCTGCCG 60
|||||||||| |||||||||||| ||| |||||||||| ||||||||||||| ||| |||
Sbjct 1 ATGGAGAGTTTCGGTCGGAGCAGCCTGTGCGTCATAGCATCAAGGACGTTTCATCTACCG 60
Query 61 TCAAGTGGCCGTCTTTTACCCTCCCTTAGCTTAACTCATCTCAAGCGCAAGC--T-A-TC 116
||||||||| ||||||| ||||| |||||||||||||||||||| ||||||| | | ||
Sbjct 61 TCAAGTGGCTGTCTTTTTCCCTCTCTTAGCTTAACTCATCTCAACCGCAAGCTATAAGTC 120
Query 117 T-C------T--CTC-CAT-CAC-CTCGT-TC--TCTTCGA--AGA--T-TCA-CTCTCC 155
| | | ||| ||| | | ||| | || ||||| | || | | | || |||
Sbjct 121 TCCTTTGTGTAACTCTCATGCTCTCTC-TCTCTTTCTTCTATTTGACTTGTAATCTTTCC 179
Query 156 ----T-CTGT--GCGATTCAGATAAGGGAAATCCTC-TGCCGCGAGGGGCGGGAGAAGGA 207
| ||| |||| ||||||||||||||||| | || ||||||||||||||||||||
Sbjct 180 TAGTTGGTGTAGGCGAGTCAGATAAGGGAAATCCCCTTG-CGCGAGGGGCGGGAGAAGGA 238
Query 208 GTCAAGGAAGATGCGAGGAGTAAGCTGCTTCAAGTAGTTTTGGTCTCTCCCCAGATTCCT 267
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 239 GTCAAGGAAGATGCGAGGAGTAAGCTGCTTCAAGTAGTTTTGGTCTCTCCTCAAATT--T 296
Query 268 GGG-AATACAGGTTGCATTGCAAGAACATGTGCGGCCTCAGCTGTTGGGCTGCATTTAGT 326
||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct 297 GGGGAATACAGGTTGCATTGCAAGAACATGTGCGGCCTCAACTGTTGGTCTTCATTTAGT 356
Query 327 TGGG 330
||||
Sbjct 357 TGGG 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5