BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324794
Length=378
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01881.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 278 3e-74
AT5G01880.1 | Symbols: | RING/U-box superfamily protein | chr5... 268 2e-71
> AT5G01881.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:339838-340266 FORWARD LENGTH=429
Length=429
Score = 278 bits (150), Expect = 3e-74
Identities = 327/403 (81%), Gaps = 49/403 (12%)
Strand=Plus/Plus
Query 2 TGGTGTGGAAGCTTGAAGTAAGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCCATCTAC 61
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 50 TGGTGTGGAAGCTTAAAGTATGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCAATATAC 109
Query 62 GGAACCGGATCTCGCATCAACGATTGTCAATCCTCTTAAGATTCCGAAAGCATCAGCATC 121
||||| | |||||| ||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 110 GGAACAAGCTCTCGCTTCATCGATGGTCAATCCTCTTAAGATTCCGAAAGCATCA---TC 166
Query 122 ATCATCTCAAATCCAAACAC-TCAGATTGCGG-CAGATGCCTACGGAGTCTTCTTGCTCT 179
|||||||||||||||||| | || ||||| || ||||| || |||||||||| |||||||
Sbjct 167 ATCATCTCAAATCCAAAC-CGTCCGATTG-GGTCAGATTCCGACGGAGTCTTTTTGCTCT 224
Query 180 CTTCCGTAGACGAAAAC-G-G--AAG---A-A-GAA-A-----CTCATCGAACTGGTTTG 224
||||||| ||||||||| | | ||| | | ||| | |||||| || ||||| |
Sbjct 225 CTTCCGTGGACGAAAACAGAGGGAAGTGGATACGAAGAAGAAACTCATCAAATTGGTTAG 284
Query 225 GAATCGAGCGGTGG------CAAAGAAAGCAAGAGGCGTGGGTGTTGTGGTTACCCTCAT 278
|||||||||||||| |||||||||||| |||||| |||||||||||||| |||||
Sbjct 285 GAATCGAGCGGTGGTAGTGGCAAAGAAAGCAAAAGGCGTTGGTGTTGTGGTTACTCTCAT 344
Query 279 CCTCGTAATCATCATCAATTATCTACTGCCATCACATTCATGGAGCAACA-GC-GAATCA 336
| |||| | ||||||||| |||| | || | |||||| ||||| || || ||
Sbjct 345 CATCGT---CGTCATCAATTTTCTA--G---TC-C---CATGGATCAACAAGCTGAG-CA 391
Query 337 TTCCGA-TTAGATTGTTATGAATTGTTTGGTAGTATTAAATAA 378
| || ||||||||||||||||||||||||| | | ||||||
Sbjct 392 G-C-GAATTAGATTGTTATGAATTGTTTGGTA-T-T-AAATAA 429
> AT5G01880.1 | Symbols: | RING/U-box superfamily protein | chr5:338899-340253
FORWARD LENGTH=1355
Length=1355
Score = 268 bits (145), Expect = 2e-71
Identities = 275/332 (83%), Gaps = 31/332 (9%)
Strand=Plus/Plus
Query 2 TGGTGTGGAAGCTTGAAGTAAGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCCATCTAC 61
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 989 TGGTGTGGAAGCTTAAAGTATGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCAATATAC 1048
Query 62 GGAACCGGATCTCGCATCAACGATTGTCAATCCTCTTAAGATTCCGAAAGCATCAGCATC 121
||||| | |||||| ||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 1049 GGAACAAGCTCTCGCTTCATCGATGGTCAATCCTCTTAAGATTCCGAAAGCATCA---TC 1105
Query 122 ATCATCTCAAATCCAAACAC-TCAGATTGCGG-CAGATGCCTACGGAGTCTTCTTGCTCT 179
|||||||||||||||||| | || ||||| || ||||| || |||||||||| |||||||
Sbjct 1106 ATCATCTCAAATCCAAAC-CGTCCGATTG-GGTCAGATTCCGACGGAGTCTTTTTGCTCT 1163
Query 180 CTTCCGTAGACGAAAAC-G-G--AAG---A-A-GAA-A-----CTCATCGAACTGGTTTG 224
||||||| ||||||||| | | ||| | | ||| | |||||| || ||||| |
Sbjct 1164 CTTCCGTGGACGAAAACAGAGGGAAGTGGATACGAAGAAGAAACTCATCAAATTGGTTAG 1223
Query 225 GAATCGAGCGGTGG------CAAAGAAAGCAAGAGGCGTGGGTGTTGTGGTTACCCTCAT 278
|||||||||||||| |||||||||||| |||||| |||||||||||||| |||||
Sbjct 1224 GAATCGAGCGGTGGTAGTGGCAAAGAAAGCAAAAGGCGTTGGTGTTGTGGTTACTCTCAT 1283
Query 279 CCTCGTAATCATCATCAATTATCTACTGCCAT 310
| |||| | ||||||||| |||| | ||||
Sbjct 1284 CATCGT---CGTCATCAATTTTCTAGTCCCAT 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17794783146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5