BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324798
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01850.1 | Symbols: | Protein kinase superfamily protein | ... 1386 0.0
> AT5G01850.1 | Symbols: | Protein kinase superfamily protein
| chr5:332337-334470 FORWARD LENGTH=1784
Length=1784
Score = 1386 bits (750), Expect = 0.0
Identities = 912/988 (92%), Gaps = 19/988 (2%)
Strand=Plus/Plus
Query 44 CGATTGATGAGAGTTTGCTTGTGGATCCCAAATTGTTGTTCATCGGCTCCAAGATTGGTG 103
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 CGATTGAGGAGAGTTTGCTTGTGGATCCCAAATTGTTGTTCATCGGCTCCAAGATTGGTG 568
Query 104 AAGGCGCTCACGGCAAAGTCTACCAAGGAAGGTATGGTAGCCAGATTGTTGCAATCAAAG 163
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 569 AAGGCGCTCACGGCAAAGTCTACCAAGGAAGGTATGGTCGTCAGATTGTTGCAATCAAAG 628
Query 164 TTCTCCACCGCGGCACCAAACCTGACGAGAAATCTTCTCTCGAGAGCCGTTTCATCCGCG 223
|| || |||| ||| ||||||||||| || ||||||||||||||||||||||| |||| |
Sbjct 629 TTGTCAACCGGGGCTCCAAACCTGACCAGCAATCTTCTCTCGAGAGCCGTTTCGTCCGTG 688
Query 224 AAGTCAATATGATGTCCCGCGTTCAACATGATAACCTCGTCAAGTTTATTGGCGCCTGCA 283
| |||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||
Sbjct 689 AGGTCAATATGATGTCCCGCGTTCAACACCATAACCTTGTCAAGTTTATTGGAGCGTGCA 748
Query 284 AAGATCCTTTAATGGTTATAGTAACTGAGCTTCTCCCTGGGATGTCCCTCCGTAAATATC 343
|||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 749 AAGATCCTTTAATGGTAATAGTAACAGAGCTTCTCCCAGGGATGTCTCTCCGTAAATATC 808
Query 344 TTACCAGCATCCGTCCCCAGATGCTCCATCTCCGCACT-GCTCTCAGCTTTGCCCTTGAC 402
| |||||||||||||| ||| |||||||||||| | || |||||| |||||||||||||
Sbjct 809 TCACCAGCATCCGTCCTCAGTTGCTCCATCTCC-CTCTTGCTCTCTCCTTTGCCCTTGAC 867
Query 403 ATTGCCCGTGCCCTGGACTGCTTACACGCCAATGGAATCATACACAGAGACCTCAAACCT 462
|| ||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 868 ATCGCCCGTGCCTTGCACTGCTTACACGCCAATGGTATCATTCACAGAGACCTCAAACCT 927
Query 463 GACAACTTATTACTCACCGAGAATCACAAATCCGTCAAGCTTGCTGATTTTGGGCTTGCT 522
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 928 GACAACTTATTGCTCACGGAGAATCACAAATCCGTCAAGCTTGCTGATTTCGGGCTTGCT 987
Query 523 AGGGAAGAAACCGTCACTGAGATGATGACTGCAGAGACTGGGACATACCGTTGGATGGCT 582
||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 988 AGGGAAGAATCCGTGACTGAGATGATGACTGCTGAGACTGGGACTTACCGTTGGATGGCT 1047
Query 583 CCTGAGCTCTACAGTACAGTCACGCTGCGTCAAGGGGAGAAGAAGCATTACAACAACAAA 642
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1048 CCTGAGCTCTACAGTACAGTGACCCTGCGTCAAGGAGAGAAGAAGCATTACAACAACAAA 1107
Query 643 GTTGATGTCTACAGCTTTGGGATTGTGCTATGGGAGCTTCTCACTAATCGTATGCCATTT 702
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1108 GTTGATGTCTACAGCTTTGGAATCGTGCTTTGGGAGCTTCTCACTAATCGTATGCCATTC 1167
Query 703 GAGGGCATGTCCAACCTGCAAGCCGCCTACGCAGCTGCATTCAAGCAGGAGAGGCCGGGA 762
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1168 GAGGGCATGTCCAATCTGCAAGCCGCCTACGCAGCAGCATTCAAGCAGGAGAGGCCCGTA 1227
Query 763 ATGCCAGAGGGGATATCTCCGAGTCTGGCGTTCATAGTGCAGTCTTGTTGGGTGGAGGAC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 ATGCCAGAGGGGATATCTCCGAGTCTGGCGTTCATAGTGCAGTCTTGTTGGGTGGAGGAC 1287
Query 823 CCAAACATGAGGCCAAGCTTCAGCCAAATTATCAGACTGCTCAATGAGTTCCTCCTTACC 882
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1288 CCAAACATGAGGCCAAGCTTCAGTCAAATTATCAGACTGCTCAATGAGTTCCTCCTTACC 1347
Query 883 CTGACTCCTCCGCCTG---AG--TCTG----A--C----ACCAACAGGACCAACGGCAGA 927
||||||||||||||| || |||| | | |||||||||||||| ||| ||
Sbjct 1348 CTGACTCCTCCGCCTCCTCAGCCTCTGCCTGAGACTGCCACCAACAGGACCAATGGCCGA 1407
Query 928 GCCATCACTGAGTTCTCCAGCCG-CGCAAAAGGGAAATTTGCCTTCATTCGCCAGCTCTT 986
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||
Sbjct 1408 GCCATCACTGAGTTCTCCATCCGTC-CAAAAGGGAAATTTGCCTTCATTCGCCAGCTTTT 1466
Query 987 CGCTGCTAAGAGGAACATAAACTCTTAG 1014
|||||| |||||||||||||||||||||
Sbjct 1467 CGCTGCCAAGAGGAACATAAACTCTTAG 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5