BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324861
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01180.1 | Symbols: PTR5, ATPTR5 | peptide transporter 5 | ... 2732 0.0
> AT5G01180.1 | Symbols: PTR5, ATPTR5 | peptide transporter 5
| chr5:61017-63848 REVERSE LENGTH=2055
Length=2055
Score = 2732 bits (1479), Expect = 0.0
Identities = 1639/1717 (95%), Gaps = 8/1717 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAGGACAAGGATATATACACACAAGATGGAACTCTTGACATTCACAAGAAACCA 60
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 103 ATGGAAGATGACAAGGATATATACACAAAAGATGGAACTCTTGACATTCACAAGAAACCA 162
Query 61 GCAAACAAGAATAAAACAGGAACCTGGAAAGCTTGCAGATTCATTCTTGGAACTGAGTGC 120
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GCCAACAAGAATAAAACTGGAACCTGGAAAGCTTGCAGATTCATTCTTGGAACTGAGTGC 222
Query 121 TGTGAAAGATTGGCTTACTATGGAATGAGTACTAATCTCGTGAACTATCTTGAGAAACAA 180
||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 223 TGTGAAAGATTAGCTTACTATGGAATGAGTACTAATCTCATCAACTATCTCGAGAAACAA 282
Query 181 ATGAATATGGAAACCGTCACTGCTTCCAACAGTGTCACTAACTGGTCTGGAACATGTTAT 240
||||||||||||| |||| ||||||| || ||||||| |||||||||||||||||||||
Sbjct 283 ATGAATATGGAAAACGTCTCTGCTTCTAAGAGTGTCAGTAACTGGTCTGGAACATGTTAC 342
Query 241 GCTACTCCTTTGATCGGTGCTTTTATCGCCGATGCTTATCTCGGTCGATACTGGACCATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GCTACTCCTTTGATCGGTGCTTTTATCGCCGATGCTTATCTCGGTCGATACTGGACCATC 402
Query 301 GCTTCCTTTGTCGTCATCTACATTTCTGGAATGACGCTATTGACGATATCAGCTTCGGTT 360
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 403 GCTTCCTTTGTCGTCATCTACATTGCCGGAATGACGCTATTGACGATATCAGCTTCGGTT 462
Query 361 CCTGGTCTAACACCAACCTGCAGCGGA-AACAGCTGTCACGCAACCGCGTCTCAAACCGC 419
||||||||||||||||||||||||||| || | |||||||||||| ||| |||||||||
Sbjct 463 CCTGGTCTAACACCAACCTGCAGCGGAGAA-ACCTGTCACGCAACAGCGGGTCAAACCGC 521
Query 420 GGTTACATTCATCGCGCTTTACTTGATCGCACTCGGTACTGGAGGGATCAAGCCTTGTGT 479
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 522 TATTACATTCATAGCGCTTTACTTGATCGCACTCGGAACTGGAGGGATCAAGCCTTGTGT 581
Query 480 CTCTTCCTTTGGTGCTGATCAGTTTGATGATACAGATGAAAAAGAGAAAGAGTCGAAAAG 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 582 CTCTTCCTTTGGTGCTGATCAGTTTGATGATACAGACGAAAAAGAGAAAGAGTCTAAGAG 641
Query 540 CTCTTTCTTTAATTGGTTTTACTTTGTGATCAACGTTGGTGCAATGATTGCTTCCTCTGT 599
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CTCTTTCTTTAACTGGTTCTACTTTGTGATCAACGTTGGTGCAATGATTGCTTCCTCTGT 701
Query 600 TCTCGTTTGGATTCAGATGAATGTTGGTTGGGGTTGGGGTTTAGGTGTTCCCACCGTCGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TCTCGTTTGGATTCAGATGAATGTTGGTTGGGGTTGGGGTTTAGGTGTTCCCACCGTCGC 761
Query 660 AATGGGTGTAGCCGTCGTTTTCTTCTTCGCCGGAAGCAAGTTCTACAGGCTGCAGAAACC 719
||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 762 AATGGCTATAGCCGTCGTGTTCTTCTTCGCCGGAAGCAACTTCTACAGGCTGCAGAAACC 821
Query 720 AGGAGGAAGTCCGCTCACAAGAATGCTTCAAGTCATTGTGGCTTCATGCAGAAAATCTAA 779
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 822 AGGAGGAAGTCCTCTCACAAGAATGCTGCAAGTCATTGTGGCTTCATGCAGAAAATCTAA 881
Query 780 AGTGAAAGTCCCTGAAGATGAATCTCTTCTCTACGAGAACCAAGACGCCGAAAGCAGTAT 839
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGTGAAAATTCCTGAAGATGAATCTCTTCTCTACGAGAACCAAGACGCCGAAAGCAGTAT 941
Query 840 CATAGGAAGCCGCAAGCTCGAACACACCAAAATATTAACGTTCTTTGATAAAGCAGCAGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 942 CATAGGAAGCCGCAAGCTCGAACACACCAAAATATTAACGTTCTTTGATAAGGCAGCAGT 1001
Query 900 GCAGACAGAGAGTGACAACAAAGGAGCAGCTAAGTCGTCGTT-ATGGAAGCTATGCACAG 958
| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1002 GGAAACAGAGAGTGACAACAAAGGAGCAGCTAAGTCGTC-TTCATGGAAGCTATGCACAG 1060
Query 959 TGACACAAGTAGAAGAGCTCAAAGCACTGATCCGCCTCTTACCGATTTGGGCCACAGGGA 1018
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1061 TGACACAAGTAGAAGAGCTCAAAGCACTGATCCGTCTCTTACCGATTTGGGCCACAGGGA 1120
Query 1019 TTGTCTTT-GCTTCTGTTTATAGCCAAATGGGGACTGTGTTTGTACTACAAGGCAACACA 1077
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TTGT-TTTCGCTTCGGTTTATAGCCAAATGGGGACTGTGTTTGTACTACAAGGCAACACA 1179
Query 1078 TTGGACCAACACATGGGACCTAACTTCAAAATCCCTTCCGCATCACTCTCCTTATTCGAC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CTGGACCAACACATGGGACCTAACTTCAAAATCCCTTCCGCATCACTCTCCTTATTCGAT 1239
Query 1138 ACGCTTAGTGTCCTCTTTTGGGCACCTGTCTATGACAAGCTAATTGTTCCCTTTGCCCGG 1197
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1240 ACGCTTAGTGTCCTGTTTTGGGCACCTGTCTACGACAAGCTAATTGTTCCCTTCGCCCGG 1299
Query 1198 AAATACACAGGTCACGAACGCGGGTTCACACAGCTTCAACGGATTGGAATCGGGCTCGTA 1257
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1300 AAATACACAGGTCACGAACGCGGATTCACACAGCTTCAACGGATTGGAATCGGGCTTGTA 1359
Query 1258 ATCTCTATCTTTGCTATGGTCTCTGCGGGAATCCTCGAGGTCGCAAGGTTAAACTACGTT 1317
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 ATCTCCATCTTTTCTATGGTCTCTGCGGGAATCCTCGAGGTCGCAAGGTTAAACTACGTT 1419
Query 1318 CAAACACACAATCTTTACAATGAAGAGACAATCCCGATGACGATTTTCTGGCAAGTTCCG 1377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1420 CAAACACACAATCTTTACAATGAAGAGACTATCCCGATGACGATTTTCTGGCAAGTTCCG 1479
Query 1378 CAGTATTTTCTCGTGGGTTGCGCGGAGGTTTTCACTTTTGTAGGTCAGCTTGAGTTCTTC 1437
||||||||| | ||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 1480 CAGTATTTTTTGGTGGGTTGCGCCGAGGTTTTCACGTTTATAGGTCAGCTTGAGTTCTTC 1539
Query 1438 TATGATCAAGCTCCTGATGCTATGAGGAGTCTCTGCTCGGCTTTGTCGCTCACCACGGTT 1497
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1540 TATGACCAAGCTCCTGATGCTATGAGGAGTCTCTGCTCGGCTTTGTCGCTCACCGCAATT 1599
Query 1498 GCATTTGGGAACTATCTGAGCACATTTTTGGTGACATTGATCACTAATA-TCACGAGATC 1556
||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||
Sbjct 1600 GCATTTGGGAACTATCTGAGCACATTTCTGGTGACATTGGTCACTAA-AGTCACGAGATC 1658
Query 1557 GGGTGGAAGACCAGGCTGGATCGCTAAAAACCTCAACAATGGTCATCTTGATTACTTCTT 1616
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1659 AGGTGGAAGACCAGGCTGGATCGCTAAGAACCTCAACAATGGTCATCTTGATTACTTCTT 1718
Query 1617 TTGGCTATTAGCTGGTCTGAGTTTCTTGAATTTCTTGATCTTTCTTTGGATTGCTAAATG 1676
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1719 TTGGCTATTAGCTGGTCTGAGTTTCTTGAATTTCTTGGTCTACCTTTGGATTGCTAAATG 1778
Query 1677 GTACACTTACAAGAAAACGACGGGGCATGCACTTTGA 1713
||||||||||||||||||||| |||||||| ||||||
Sbjct 1779 GTACACTTACAAGAAAACGACCGGGCATGCGCTTTGA 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5