BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324871
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01075.1 | Symbols: | Glycosyl hydrolase family 35 protein ... 340 3e-93
> AT5G01075.1 | Symbols: | Glycosyl hydrolase family 35 protein
| chr5:26848-27449 REVERSE LENGTH=519
Length=519
Score = 340 bits (184), Expect = 3e-93
Identities = 227/246 (92%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 1 ATGAAGACATCAAGCTTTGTCTTCCTTTTGGTTGTAATAATCCTAAGCTTCT--C-ACTA 57
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 27 ATGAAGACGTCAAGCTTTGTCTTCCTTTTGGTTGTAATAATCCTAAGCTTCTCACTACTA 86
Query 58 GCTTC--C-TCTGAAATGAAACTGAGGTTGGAGGATTACAATTTTCCAGTGGATCCAACT 114
||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 87 GCTTCTTCTTCTGAAATGAAAGTGGGGTTGGAGGATTACAATTTTCCAGTGGATCCAACT 146
Query 115 CCGACGACAAAAGCTACGATAAAACCAGGTCCTATTGAGCATGGAACTCCTCTCAATCCT 174
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CCGACGACAAAAGCTTCGATAAAACCAGGTCCTATTGAGCATGGAACTCCTCTCAATCCT 206
Query 175 TATATACCTAAGCCTCCTTCTTCTTCTTC-TCCTCCTCCACAACAACAA-CCTCAAGACG 232
||||| ||||||||||||||| ||||||| || |||||| | ||| ||| || |||||||
Sbjct 207 TATATTCCTAAGCCTCCTTCTCCTTCTTCGTC-TCCTCCTCCACAGCAATCC-CAAGACG 264
Query 233 GTGGAT 238
||||||
Sbjct 265 GTGGAT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5