BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324881
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12350.1 | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcy... 1059 0.0
AT5G02080.1 | Symbols: | DNA / pantothenate metabolism flavopr... 695 0.0
> AT1G12350.1 | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcysteine
synthetase | chr1:4198413-4200802 FORWARD LENGTH=1279
Length=1279
Score = 1059 bits (573), Expect = 0.0
Identities = 828/944 (88%), Gaps = 45/944 (5%)
Strand=Plus/Plus
Query 2 TGGAAGATGAAATTAGTTCGTTTTTTGAATCATCCCCACCTCTGAAGAAC-ATGAAGGAG 60
||||||||||||| ||||||||||| ||||| || ||||||||||||||| | ||| |||
Sbjct 179 TGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCACCTCTGAAGAACAAGGAA-GAG 237
Query 61 ACTACAG-AG--AATCTTAATCAGTTCATCGAGCTGAATTCTTCAGGGTTTTC-AGGA-G 115
| | | | || ||||||||||||||||| |||||||||||||| | | || |||| |
Sbjct 238 A-T-C-GTAGCCAATCTTAATCAGTTCATTGAGCTGAATTCTTC---G-TGTCAAGGAGG 290
Query 116 GA--AGGAGGATTGTATGTGTGACTTCAGGTGGAACAACGGTTCCATTGGAGCAACGATG 173
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 291 GATGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCCATTGGAGCAACGATG 350
Query 174 TGTTAGGTATATCGATAACTTCAGCTCCGGAAATAGAGGTGCTGCTTCTACTGAGAATTT 233
||| || || || ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 351 TGTAAGATACATTGATAATTTCAGCTCTGGAAATAGAGGTGCTGCTTCTACTGAGAATTT 410
Query 234 TGTGAAGGCTGGATATGCTGTGATATTTCTGTATAGGAGGGGAACTTGCCAACCGTATTG 293
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 411 CGTCAAGGCTGGATATGCTGTGATATTTCTCTATAGGAGGGGAACTTGTCAACCGTATTG 470
Query 294 CCGGTCTCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATAAGACTAACAT 353
||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 471 CCGGTATCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATGCCAAAAACAT 530
Query 354 TCAAGTTCATAAATCACATTT-GGAAGCTGTGAAAATGGCTGTTATGGATCAGCAAGCAG 412
|||||||||| ||||||| ||| |||||||| |||||||||||||| |||||||| |
Sbjct 531 TCAAGTTCATGGGTCACATTCAGGA-GCTGTGAAGATGGCTGTTATGGACCAGCAAGCTG 589
Query 413 CAGTAGCAGAAGGTCGCTTACTAAAACTCCCATTCTCAACCATATATGAGTATCTTCAGA 472
|||| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 590 CAGTTGCAGAAGGTCGCTTGCTTAAACTCCCATTCTCAACCATATATGAATATCTCCAGA 649
Query 473 TGTTGCGGTTGATTGCAATGGTATTGAAAGATGTTGGTCCATATTCAATGTTTTATCTTG 532
|||||||||||||||| | | ||||||||||||| ||||||| ||| |||||||||||||
Sbjct 650 TGTTGCGGTTGATTGCTACGATATTGAAAGATGTCGGTCCATGTTCGATGTTTTATCTTG 709
Query 533 CTGCTGCTGTATCTGACTTTTATGTGCCATGGGATA-GCATGACAGAGCACAAAATAGAA 591
||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 710 CTGCTGCTGTATCTGACTTCTATGTGCCATGGT-TAAGCATGACAGAGCACAAAATAGAA 768
Query 592 TCAGGATCTGGTCCTTTAGACATAAGACTAGCTCAAGTCCCTAAAATGCTATCAATCTTG 651
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 TCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAATGCTTTCAATCTTG 828
Query 652 AGATCAAAT-GG-CT--------TT-CTGCATATCATTCAAG----A--C----TCAAAG 690
||||||||| || || || |||||||||||||||| | | ||||||
Sbjct 829 AGATCAAATTGGGCTCCAAAGGCTTTCTGCATATCATTCAAGCTTGAGACAGACTCAAAG 888
Query 691 ATTCTGATAGAGAAGGCTACAAAGGCTCTA-AGAAAATACAAAGTTCACGCAGTTGTAGC 749
||| || ||||||| |||||||||||| || | |||||||||||| ||||||||||||||
Sbjct 889 ATTTTGCTAGAGAAAGCTACAAAGGCTTTACA-AAAATACAAAGTGCACGCAGTTGTAGC 947
Query 750 CAATGAGCTATCAACGCGTAAGGAAGAGGTTGTGGTTGTTTCAAGCAGTGGTAATGTTGT 809
||||| |||| |||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 948 AAATGAACTATTAACGCGTAAGGAGGAAGTTGTGGTTGTTTCAAGTAGCGGTAATGTTGT 1007
Query 810 GGTTAGACGCGAATGGGA-TAAGCCTGAATCTATTGTTGAAGATAATCTCATTCGTCTCA 868
||| ||||| || | | | |||||| |||||||| || |||||||||||||||||||||
Sbjct 1008 GGTGAGACGTGA-TAGCAATAAGCCGGAATCTATCGTAGAAGATAATCTCATTCGTCTCC 1066
Query 869 TCGTAGACCGACATTCAACATACATCAAAGAATATCACAGTTGA 912
||||||| ||||||||||||||||||||||||| || || ||||
Sbjct 1067 TCGTAGATCGACATTCAACATACATCAAAGAATCTCTCACTTGA 1110
> AT5G02080.1 | Symbols: | DNA / pantothenate metabolism flavoprotein
| chr5:409811-411557 FORWARD LENGTH=813
Length=813
Score = 695 bits (376), Expect = 0.0
Identities = 464/502 (92%), Gaps = 23/502 (5%)
Strand=Plus/Plus
Query 428 GCTTACTAAAACTCCCATTCTCAACCATATATGAGTATCTTCAGATGTTGCGGTTGATTG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GCTTACTAAAACTCCCATTCTCAACCATATATGAGTATCTTCAGATGTTGCGGTTGATTG 367
Query 488 CA-ATGGTATTGAAAGATGTTGGTCCATATTCAATGTTTTATCTTGCTGCTGCTGTATCT 546
|| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 368 CAGA-GGCATTGAAAGATGTTGGTCCATGTTCAATGTTTTATCTTGCTGCTGCTGTATCT 426
Query 547 GACTTTTATGTGCCATGGGATAGCATGACAGAGCACAAAATAGAATCAGGATCTGGTCCT 606
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 427 GACTTCTATGTGCCATGGAAGAGCATGACAGAGCACAAAATAGAATCAGGATCTGGTCCT 486
Query 607 TTAGACATAAGACTAGCTCAAGTCCCTAAAATGCTATCAATCTTGAGATCAAAT-GG-CT 664
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 487 TTAGACATAAGACTAGCTCAAGTCCCTAAAATGCTATCAGTCTTGAGATCAAATTGGGCT 546
Query 665 ---------TTCTGCATATCATTCAAG----A--C----TCAAAGATTCTGATAGAGAAG 705
|||||||||||||||||| | | |||||||||||||| ||||||
Sbjct 547 CCAAAGGCCTTCTGCATATCATTCAAGCTTGAGACAGACTCAAAGATTCTGATGGAGAAG 606
Query 706 GCTACAAAGGCTCTAAGAAAATACAAAGTTCACGCAGTTGTAGCCAATGAGCTATCAACG 765
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 607 GCTACAAAGGCTCTAAGAAAATACAAAGTGCACGCAGTTGTAGCCAATGAGCTATCAACC 666
Query 766 CGTAAGGAAGAGGTTGTGGTTGTTTCAAGCAGTGGTAATGTTGTGGTTAGACGCGAATGG 825
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 667 CGTAAGGAAGAAGTTGTGGTTGTTTCAAGCAGCGGTAATGTTGTGGTTAGACGCGAATGC 726
Query 826 GATAAGCCTGAATCTATTGTTGAAGATAATCTCATTCGTCTCATCGTAGACCGACATTCA 885
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 727 GATAAGCCTGAATCTTTTGTTGAAGATAATCTCATTCGTCTCATCGTAGATCGACATTCA 786
Query 886 ACATACATCAAAGAATATCACA 907
|||||||||||||||| |||||
Sbjct 787 ACATACATCAAAGAATCTCACA 808
Score = 420 bits (227), Expect = 1e-116
Identities = 283/309 (92%), Gaps = 7/309 (2%)
Strand=Plus/Plus
Query 52 ATGAAGGAGACTAC-AGAGAATCTTAATCAGTTCATCGAGCTGAATTCTTCAGGGTTTTC 110
||| |||||| | | ||||||||||||| |||||||| | |||||||| || | | |
Sbjct 1 ATGGAGGAGA-TTCTAGAGAATCTTAATGAGTTCATCAAACTGAATTCATC---G-TCAC 55
Query 111 -AGGAGGAAGGAGGATTGTATGTGTGACTTCAGGTGGAACAACGGTTCCATTGGAGCAAC 169
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 56 AAGGGGGAAGGAGGATTGTATGTGTGACTTCAGGGGGAACAACGGTTCCATTGGAGCAAC 115
Query 170 GATGTGTTAGGTATATCGATAACTTCAGCTCCGGAAATAGAGGTGCTGCTTCTACTGAGA 229
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 116 GATGTGTTAGGTATATCGATAATTTCAGCTCCGGAAACAGAGGTGCTGCTTCTACTGAGA 175
Query 230 ATTTTGTGAAGGCTGGATATGCTGTGATATTTCTGTATAGGAGGGGAACTTGCCAACCGT 289
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATTTCGTCAAGGCTGGATATGCTGTGATATTTCTGTATAGGAGGGGAACTTGCCAACCGT 235
Query 290 ATTGCCGGTCTCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATAAGACTA 349
|||| || |||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 236 ATTGTCGATCTCTTCCCGATGATCCATTCCTTGAATGTTTTGAGTTTTCTGATAAGACTA 295
Query 350 ACATTCAAG 358
|||||||||
Sbjct 296 ACATTCAAG 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5