BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324883
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family ... 2204 0.0
AT3G09300.1 | Symbols: ORP3B | OSBP(oxysterol binding protein)-... 1328 0.0
> AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family
protein | chr5:413520-416225 FORWARD LENGTH=1690
Length=1690
Score = 2204 bits (1193), Expect = 0.0
Identities = 1305/1361 (96%), Gaps = 0/1361 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTAACGATCCAAAAAACGGCGGCGGTTTCTTCGCCTCTCTTGCTTCATCCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGGCTTCTAACGATCCAAAAAACGGCGGCGGTTTCTTCGCCTCTCTTGCTTCATCCATC 179
Query 61 ACCAATTTCGGATCGGCCATGAGCAAATCAGTGAACGGTTTGATGGGTTATGAAGGGCTT 120
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 180 ACCAATTTCGGATCGGCCATGAGTAAATCAGTGAACGGTTTGATGGGATATGAAGGGCTT 239
Query 121 GAAGTGATTAATCcagagggaggtacagaagatgcagaggaggaagcaggaagaggaaga 180
||||||||||||||||| ||| ||||||| ||||||||||| |||||||| |||||||||
Sbjct 240 GAAGTGATTAATCCAGAAGGAAGTACAGACGATGCAGAGGAAGAAGCAGGGAGAGGAAGA 299
Query 181 tggaagcaagaggaaCGTGATGGTTACTGGAAGATGATGCAGAAGTATATAGGGTCTGAT 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 300 TGGAAGCAAGAGGAACGTGATGGCTATTGGAAGATGATGCAGAAGTATATAGGGTCTGAT 359
Query 241 GTTACATCTATGGTGACTCTTCCTGTGATTATTTTTGAACCCATGACAATGCTGCAGAAA 300
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 360 GTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAA 419
Query 301 ATGGCTGAGTTGATGGAATACTCGCATCTGCTAGACATGGCTGACAAAACTGAAGATCCT 360
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 420 ATGGCTGAGTTGATGGAATACTCATATTTGCTAGACATGGCTGACAAAACTGAAGATCCT 479
Query 361 TACATGCGTATGGTATATGCATCATCATGGGCTATATCGGTGTACTATGCTTACCAGCGT 420
|||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||
Sbjct 480 TACATGCGTATGGTATATGCATCATCATGGGCTATATCTGTGTATTACGCCTACCAGCGT 539
Query 421 ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGGG 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTATGAGATGACTAATCATAATGGG 599
Query 481 ATCAATTTTATAGCTGAACAGGTTTGCCATCACCCACCAATGAGTGCTGGTCACGCAGAA 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 600 ATCAATTTTATAGCTGAACAGGTCTGCCATCACCCACCAATGAGTGCTGGTCATGCTGAA 659
Query 541 AACGAGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTCTTGGGCAACTCA 600
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 660 AACGAGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTCCTAGGCAACTCA 719
Query 601 ATTGACGTCTACCCAGTAGGAAGGACCCGAGTGACACTTAAAAGAGATGGTGTGGTTCTT 660
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 720 ATTGATGTCTACCCAGTAGGAAGGACACGAGTGACACTTAAAAGAGATGGTGTCGTTCTT 779
Query 661 GATCTTGTACCTCCCCTGACAAAGGTTCATAACCTTATCTTTGGTCGAACATGGGTAGAT 720
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 780 GATCTTGTACCTCCACTGACAAAGGTTCATAACCTTATCTTCGGTCGAACATGGGTCGAT 839
Query 721 TCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTT 899
Query 781 CAACCATGCGGCTGGTTTGGATCTGGACGTTATGAAGTGGACGGTTACGTGTATAATTCA 840
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 CAACCATGTGGCTGGTTTGGATCTGGACGATATGAAGTGGACGGTTACGTGTATAATTCA 959
Query 841 GCTGAAGAGCCCAAGATGCTAATGACCGGTAAATGGAACGAGTCCTTGAGTTATCAGCCA 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 GCTGAAGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCA 1019
Query 901 TGTGATGTGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGGTATGGAAGGTCGCG 960
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1020 TGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGGTGTGGAAGGTTGCT 1079
Query 961 GAAGCTCCAAAGAACGATAAATTCCAATACACACATTTCGCTCACAAGATCAATAGTTTT 1020
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1080 GAAGCTCCAAAGAACGATAAATACCAATACACACATTTTGCTCACAAGATCAATAGTTTT 1139
Query 1021 GACACTGCTCCTAAAAATCTACTGTCATCTGATTCTCGTCTACGTCCAGATAGATACGCG 1080
|||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1140 GACACTGCCCCTAAAAAGCTACTGTCATCTGATTCACGTCTACGTCCTGATAGATACGCG 1199
Query 1081 CTTGAGATGGGTGATATGTCCAAATCTGGATTTGAAAAGAGCAGCCTAGAGGATAGACAA 1140
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 CTGGAGATGGGTGATATGTCCAAATCTGGATTCGAAAAGAGCAGCCTAGAGGATAGACAA 1259
Query 1141 AGAGCTGAGAAGAGAAGCCGAGAAGAGAAAGGCCAAAGATTTGCTCCAAAATGGTTTGAT 1200
||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1260 AGAGCTGAGAAGAAAAGCAGAGAAGAGAAAGGCCAAAAATTTGCTCCAAAATGGTTTGAT 1319
Query 1201 GAAACAGAGGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTGTACCAATTCAATGGA 1260
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1320 GAAACAGAAGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGA 1379
Query 1261 AAGTACTCGGTGCACCGCGCCACAGCCGATAACCCTGAGGATACAACGGATGTGAAGGTG 1320
|||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||| ||
Sbjct 1380 AAGTACTCGGTGCACCGCGCCACAGCTGAAAACTCTGAGGATACAACCGATGTGAAGTTG 1439
Query 1321 ACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTA 1361
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTA 1480
> AT3G09300.1 | Symbols: ORP3B | OSBP(oxysterol binding protein)-related
protein 3B | chr3:2857847-2860668 FORWARD LENGTH=1804
Length=1804
Score = 1328 bits (719), Expect = 0.0
Identities = 1141/1345 (85%), Gaps = 28/1345 (2%)
Strand=Plus/Plus
Query 31 GGTTTCTTCGCCTCTCTTGCTTCATCCATCACCAATTTCGGATCGGCCATGAGCAAATCA 90
||||||||||||||||||||||| || ||| ||||||| ||||| || |||| |||||||
Sbjct 267 GGTTTCTTCGCCTCTCTTGCTTCGTCGATCTCCAATTTGGGATCTGCTATGACCAAATCA 326
Query 91 GTGAACGGTTTGATGGGTTATGAAGGG-CTTGAAGTGATTAATCcagagggaggtacaga 149
|| || |||||| | |||| |||| |||||||| || ||||| || ||| |||||||
Sbjct 327 GTTAATGGTTTGGTTCCCTATG-AGGGACTTGAAGTTATCAATCCTGAAGGAAGTACAGA 385
Query 150 agatgcagaggaggaagcaggaagaggaagatggaagcaagaggaaCGTGATGGTTACTG 209
||||| |||||||||||| | ||||||||||||||||||||||| || ||||| || ||
Sbjct 386 TGATGCTGAGGAGGAAGCAAGCAGAGGAAGATGGAAGCAAGAGGATCGAGATGGCTATTG 445
Query 210 GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTGACTCTTCCTGTGAT 269
|||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 446 GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGAT 505
Query 270 TATTTTTGAACCCATGACAATGCTGCAGAAAATGGCTGAGTTGATGGAATACTCGCATCT 329
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 506 TATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGTTGATGGAATACTCGCATCT 565
Query 330 GCTAGACATGGCTGACAAAACTGAAGATCCTTACATGCGTATGGTATATGCATCATCATG 389
|||||||||||| |||||||| || || ||||| |||| ||||| ||||||||||| ||
Sbjct 566 GCTAGACATGGCAGACAAAACCGAGGACCCTTATTTGCGCATGGTGTATGCATCATCGTG 625
Query 390 GGCTATATCGGTGTACTATGCTTACCAGCGTACCTGGAAGCCGTTCAATCCAATTCTCGG 449
||||||||| ||||| ||||||| ||| ||||||||||| || ||||||||||| || ||
Sbjct 626 GGCTATATCCGTGTATTATGCTTTCCAACGTACCTGGAAACCATTCAATCCAATCCTTGG 685
Query 450 TGAGACTTACGAGATGACTAATCATAATGG-GATCAATTTTATAGCTGAACAGGTTTGCC 508
||||||||| |||||| ||||| | ||||| | | || || ||| |||||||||| |||
Sbjct 686 TGAGACTTATGAGATGGCTAATTACAATGGTGTT-AACTTCATATCTGAACAGGTCAGCC 744
Query 509 ATCACCCACCAATGAGTGCTGGTCACGCAGAAAACGAGCATTTCGCTTACGATTGCACTT 568
||||||||||||||||||||||||| || ||||| |||||||| | || ||||| ||||
Sbjct 745 ATCACCCACCAATGAGTGCTGGTCATGCTGAAAATGAGCATTTTACGTATGATTGTACTT 804
Query 569 CAAAACTGAAAACGAAATTCTTGGGCAACTCAATTGACGTCTACCCAGTAGGAAGGACCC 628
||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||| |
Sbjct 805 CAAAACTGAAAACAAAATTTTTGGGCAATTCCATTGACGTTTACCCAGTAGGAAGGACAC 864
Query 629 GAGTGACACTTAAAAGAGATGGTGTGGTTCTTGATCTTG-TACCTCCCCTGAC-AAAGGT 686
| |||||||||||||||||||| || |||||||| |||| ||||||| ||||| |||| |
Sbjct 865 GGGTGACACTTAAAAGAGATGGAGTTGTTCTTGA-CTTGGTACCTCCTCTGACCAAAG-T 922
Query 687 TCATAACCTTATCTTTGGTCGAACATGGGTAGATTCGCCAGGAGAGATGGTCATGACGAA 746
||| ||||| |||||||| ||||| ||||| |||||||| || || ||| ||||||| ||
Sbjct 923 TCACAACCTAATCTTTGGACGAACTTGGGTCGATTCGCCTGGGGAAATGATCATGACAAA 982
Query 747 CCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGCGGCTGGTTTGGATCTGG 806
| |||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 983 TCAGACCACCGGTGACAAAGTCGTGCTTTACTTTCAACCATGTGGCTGGTTCGGATCTGG 1042
Query 807 ACGTTATGAAGTGGACGGTTACGTGTATAATTCAGCTGAAGAGCCCAAGATGCTAATGAC 866
|| ||||||||||| || || || ||||| | |||| ||||| ||||| || |||||
Sbjct 1043 TCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCCTAAGATACTCATGAC 1102
Query 867 CGGTAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATG-TGGAAGGCGAACCTCTTC 925
|| ||||||||||||||| ||||||||||||| ||||||| || |||| |||||||| |
Sbjct 1103 TGGCAAATGGAACGAGTCCATGAGTTATCAGCCGTGTGATGGTG-AAGGTGAACCTCTCC 1161
Query 926 CAGGCACCGAACTGAAGGAGGTATGGAAGGTCGCGGAAGCT-CCAAAGAACGATAAAT-T 983
|||||||||||||||| ||||||||||| |||| || | | |||||| | || |||| |
Sbjct 1162 CAGGCACCGAACTGAAAGAGGTATGGAAACTCGCTGATG-TGCCAAAGGATGACAAATAT 1220
Query 984 CCAATACACACA-TTTCGCTCACAAGATCAATAGTTTTGACACTGCTCCTAAAAATCTAC 1042
| ||||||| || ||| ||||||||||| ||||| || |||||||| || ||||| ||
Sbjct 1221 C-AATACACTCACTTT-GCTCACAAGATTAATAGCTTCGACACTGCCCCGAAAAAGCTGT 1278
Query 1043 TGTCATCTGATTCTCG-TCTACGTCCAGATAGATACGCGCTTGAGATGGGTGATATGTCC 1101
|| | |||||||| || | |||| || ||||||||||| ||||||||||| || ||||||
Sbjct 1279 TGCCCTCTGATTCACGGT-TACGACCTGATAGATACGCACTTGAGATGGGCGACATGTCC 1337
Query 1102 AAATCTGGATTTGAAAAGAGCAGCCTAGAGGATAGACAAAGAGCTGAGAAGAGAAGCCGA 1161
||||| || | ||| ||||||||| | || || ||||| |||||||| ||||||| |||
Sbjct 1338 AAATCAGGCTATGAGAAGAGCAGCATGGAAGAGAGACAGAGAGCTGAAAAGAGAACCCGC 1397
Query 1162 GAAGAGAAAGGCCAAAGA-TTTGCTCCAAAATGGTTTGATGAAACAGAGGAAGTCACTCC 1220
||||||||||||||| | ||| ||||||||||||| |||| ||| || ||||||||| |
Sbjct 1398 GAAGAGAAAGGCCAA-GCCTTTACTCCAAAATGGTTCGATGTAACGGAAGAAGTCACTGC 1456
Query 1221 TACACCATGGGGTGATCTCGAAGTGTACCAATTCAATGGAAAGTACTCGGTGCACCGCGC 1280
|||||||||||||||||| ||||| ||||||||||||||||||||||||| || || ||
Sbjct 1457 TACACCATGGGGTGATCTGGAAGTTTACCAATTCAATGGAAAGTACTCGGAACATCGTGC 1516
Query 1281 CA-CAGCCGATAACCCTGAGGATA-CAACGGATG-TGAAGGT-GACCCAATTCAACCCTT 1336
| | || |||||| |||| |||| || || | | ||| | || |||||||||||| |
Sbjct 1517 -AGCTGCGGATAACTCTGAAGATAACACCG-ACCCT-AAG-TCGATCCAATTCAACCCAT 1572
Query 1337 GGCAATTCCAAGATCTCTCTGCTTA 1361
|||||||||||||||| ||| ||||
Sbjct 1573 GGCAATTCCAAGATCTGTCTACTTA 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5