BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324894

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02210.1 | Symbols:  | GCK domain-containing protein | chr5:...   460    4e-129


> AT5G02210.1 | Symbols:  | GCK domain-containing protein | chr5:439253-439874 
REVERSE LENGTH=486
Length=486

 Score =  460 bits (249),  Expect = 4e-129
 Identities = 299/324 (92%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  118  GAAAGCCTTGTGAAGACTTTCCTACCTTCAACTACTGTTTCCCTAAACGAAATAAACGAA  177
            ||||||| |||||||||||||||  |||||||||||||||||||| ||||||||||||||
Sbjct  163  GAAAGCCATGTGAAGACTTTCCTGTCTTCAACTACTGTTTCCCTAGACGAAATAAACGAA  222

Query  178  GATGAAGATGAGAAGTTTGTAGAATTCATGAAAGGAGGTGGTTGCAAAGAATCATACACT  237
            || |||||| |||||||||||||||||||||||||||||||||||||||||||||  || 
Sbjct  223  GAGGAAGATCAGAAGTTTGTAGAATTCATGAAAGGAGGTGGTTGCAAAGAATCATTTACG  282

Query  238  GCTTGGCATGATGATTGCAATTTCACTGAGGAGGAAGCTGAGAAGAACAAAGATTTGGTT  297
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  283  GCTTGGAATGATGATTGCAATTTCACTGAGGAGGAAGCTGAGAAGAACAAAGATTTGGTT  342

Query  298  ACTAAGTGTGCGGGACTCTTTGGGAAGCTATCCAAGTGTCTGGATGTTCACTCTGATTAC  357
            ||||||||||||||||||||||||| | | ||||||||| |||||  |||||||||||||
Sbjct  343  ACTAAGTGTGCGGGACTCTTTGGGACGTTTTCCAAGTGTATGGATACTCACTCTGATTAC  402

Query  358  TATCATCCAATTCTCGCGGTGAGGAAAACTACTGAAGAACATTTGGAGAAGGAGCTCGCA  417
            |||||||| |||||||| |||| ||||||||| ||||||||||||||||| |||||||||
Sbjct  403  TATCATCCGATTCTCGCAGTGAAGAAAACTACCGAAGAACATTTGGAGAAAGAGCTCGCA  462

Query  418  GCTTTCTTCGCGGAAGGAAGCTAA  441
             ||||||||  ||||| |||||||
Sbjct  463  ACTTTCTTCTTGGAAGAAAGCTAA  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5