BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324904
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein 3... 2409 0.0
AT2G13960.1 | Symbols: | Homeodomain-like superfamily protein ... 662 0.0
> AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein
3r-5 | chr5:483123-486434 REVERSE LENGTH=2056
Length=2056
Score = 2409 bits (1304), Expect = 0.0
Identities = 1495/1583 (94%), Gaps = 30/1583 (2%)
Strand=Plus/Plus
Query 1 ATGAGCTCAAGTTCGAATCCAGCGGCTTGTTCACCGGAAAAGGAGGAAAGAAGTGAATTG 60
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 88 ATGAGCTCAAGTTCGAATCCACCGGTTTGTTCACCGGAAAAGGAGGAAAGAAGTGAAATG 147
Query 61 AAAATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCTTCTGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AAAATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCTTCTGCA 207
Query 121 TCCGAAGGCAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACTGTA 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 208 TCCGAAGGTAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACAGTA 267
Query 181 TCTTCAACTCCTCGGAGGACTAGTGGCCCTATGAGACGAGCAAAAGGTGGTTGGACTCCA 240
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 268 TCTTCATTTCCTCGGAGGACTAGTGGACCTATGAGACGAGCAAAAGGTGGTTGGACTCCA 327
Query 241 GAGGAGGATGAGACACTTAGACGAGCAGTTGACAAGTATAAGGGGAAGAGGTGGAAGAAA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 328 GAGGAGGATGAGACACTTAGACGAGCAGTTGAAAAGTATAAGGGGAAGAGGTGGAAGAAA 387
Query 301 ATAGCGGAATTTTTTCCAGAAAGAACAGAAGTCCAATGCTTGCACCGGTGGCAGAAAGTT 360
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 388 ATAGCGGAATTTTTCCCAGAGAGAACAGAAGTCCAATGCTTGCACAGGTGGCAGAAAGTT 447
Query 361 CTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGGAGGATGATAAAATCGTTGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 CTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGGAGGATGATAAAATCGTTGAA 507
Query 421 CTTGTaaaaaaaTATGGACCTGCCAAATGGTCTGTTATCGCGAAGTCTTTACCAGGTCGT 480
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 508 CTTGTAAAAAAATATGGACCTGCCAAATGGTCTGTCATCGCCAAGTCCTTACCAGGTCGT 567
Query 481 ATCGGGAAGCAATGTCGAGAAAGGTGGCACAACCATTTAAATCCTGGTATTAGAAAGGAT 540
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 ATTGGGAAACAATGTCGAGAAAGGTGGCACAACCATTTAAATCCTGGTATTAGAAAGGAT 627
Query 541 GCTTGGACCATAGAAGAAGAATCAGCTCTCATGAATTCTCATCGAATGTACGGAAACAAA 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GCTTGGACCGTAGAAGAAGAATCAGCTCTCATGAATTCTCATCGAATGTACGGAAACAAA 687
Query 601 TGGGCGGAAATTGCTAAGGTTTTACCGGGAAGGACTGATAACGCCATAAAGAACCATTGG 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 688 TGGGCGGAAATTGCTAAGGTTTTACCAGGAAGGACTGATAACGCCATAAAGAACCATTGG 747
Query 661 AATAGTTCACTGAAGAAAAAGTTAGAGTTCTACTTAGCAACCGGTAACTTGCCACCGCCA 720
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 748 AATAGTTCACTGAAGAAAAAATTAGAGTTCTACTTAGCAACTGGTAACTTGCCACCGCCA 807
Query 721 GCAACCAAATTCAGCGTTCTGAATGATATTGGTGATGGAGACAGAGATTCCAAGCAGTCT 780
|||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 808 GCAAGCAAATTCATCGTTCTGAAAGATATTGCTGATGGAGACAGAGATTCCAAGCAGTCT 867
Query 781 AGTGCAACTAAACCTTTCAAGGATTCTGATTCTG-TTACCCAAACCTCTTCAGGAAATAC 839
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 868 AGTGCAACTAAACCTTTCAAGGATTCTGATTC-GCTTACCCAAACCTCTTCAGGAAATAC 926
Query 840 AGATTCAAATGAAGTTGGAAGAGACCATTTTGACTATTCTTCAGCTCTGCTTGAAGAAGT 899
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 927 AGATTCAAATGAAGTTGGAAGAGACCATTTTGACTCTTCTTCCGCTCTGCTTGAAGAAGT 986
Query 900 AGCTGCTTCACGAAGAATCGGTGTCAATGAGTATGCTTGCTCTCCCGTTGAGTACAAGCC 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 987 AGCTGCTTCACGAAGAATCGGTGTCAATGAGTATGCTTGCTCTCCTGTTGAGTACAAGCC 1046
Query 960 TCAGTTGCCTAATCTGGAACCAATTTCAGAGGAAGTCAGAATCAACTCAAAAGCTTATGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 TCAGTTGCCTAATCTGGAACCAATTTCAGAGGAAGTCAGAATCAACTCAAAAGCTTATTT 1106
Query 1020 TGAAAGATCAATCCAGAGGAAAGAAGAAAATGGGTTTGGAACTCCAAAGCATGGGAGTTT 1079
||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 1107 TGAGAGATCAATCCAGAGGAAAGTAGAAAACGGGTTTGGAACTCCAAAGCATGGGAATTT 1166
Query 1080 ATACTACAAGTCTCCACTTGACTATTACTTTCCATCAGAAGCGGATCTGCAGCATATGTA 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1167 ATACTATAAGTCTCCACTTGACTATTACTTTCCATCAGAAGCGGATCTGCAACATATGTA 1226
Query 1140 CGGATATGAATGTGGTTGCAGTCCCGGTGCTGCATCACCAGTCAGCTTAATGACTCCACC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1227 CGGATATGAATGTGGTTGCAGTCCCGGTGCTGCATCACCAGTCAGCTTAATGACTACACC 1286
Query 1200 GTGTAATAAAGACAGTGGTTTAGCTGCAACAAGAAGTCCTGAATCTTTCTTGAGAGAAGC 1259
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1287 CTGTAATAAAGACAGTGGTTTAACTGCAACGAGAAGTCCTGAATCTTTCTTGAGAGAAGC 1346
Query 1260 TGCTAGGACTTTTCCAAACACACCTTCTATTTTTAGGAAAAGGCGAAAAGTTGTTTTGGC 1319
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1347 TGCTAGGACTTTTCCAAACACACCTTCTATTTTTAGGAAAAGGCGAAAGGTTGTTTTGGC 1406
Query 1320 GGCGAAAGCAGATGATGTTGTTGTT---AATGTTGGAGTTAAGGAAGTTGATCAAAAAGA 1376
|||||| |||||| |||||||||| |||| || ||||||||||||||||| ||||||
Sbjct 1407 AGCGAAAACAGATGCTGTTGTTGTTGTTAATGGTGTAGTTAAGGAAGTTGATCGAAAAGA 1466
Query 1377 AGACAGTAAAGATAGTTCAGATATTTCTCCAGCTGGGAGAGAAAGTTTGTTGCTGGAGAC 1436
||| |||||||||| | || | | | |||||||||||||||||||
Sbjct 1467 AGAAAGTAAAGATA-T---GA----------G-----A-A-AAAGTTTGTTGCTGGAGAC 1505
Query 1437 AACTGATGATTGCAGGGATGATGACA-AACT-GGAATCAAATGGGAATGCTTTCAACGTG 1494
||||||| ||||||| |||||||| | |||| || | |||||| ||||||||||| ||
Sbjct 1506 AACTGATAATTGCAGTGATGATGA-AGAACTCGGGTT-AAATGGAAATGCTTTCAATTTG 1563
Query 1495 TCTCCACCATATCGATTAAGAGCTAAAAGAACAGCTGTAATCAAATCAAGACAGCTTGAG 1554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TCTCCACCATATCGGTTAAGAGCTAAAAGAACAGCTGTAATCAAATCAAGACAGCTTGAG 1623
Query 1555 TTTACATTTGCAAAGGAGAAGCA 1577
||||||| || ||||||||||||
Sbjct 1624 TTTACATCTGAAAAGGAGAAGCA 1646
> AT2G13960.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:5859585-5861311 FORWARD LENGTH=757
Length=757
Score = 662 bits (358), Expect = 0.0
Identities = 386/400 (97%), Gaps = 0/400 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTCAAGTTCGAATCCAGCGGCTTGTTCACCGGAAAAGGAGGAAAGAAGTGAATTG 60
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 99 ATGAGCTCAAGTTCGAATCCACCGGTTTGTTCACCGGAAAAGGAGGAAAGAAGTGAAATG 158
Query 61 AAAATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCTTCTGCA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 159 AAGATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCCTCTGCA 218
Query 121 TCCGAAGGCAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACTGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 219 TCCGAAGGCAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACAGTA 278
Query 181 TCTTCAACTCCTCGGAGGACTAGTGGCCCTATGAGACGAGCAAAAGGTGGTTGGACTCCA 240
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 279 TCTTCATTTCCTCGGAGGACTAGTGGACCTATGAGACGAGCAAAAGGTGGTTGGACTCCA 338
Query 241 GAGGAGGATGAGACACTTAGACGAGCAGTTGACAAGTATAAGGGGAAGAGGTGGAAGAAA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 339 GAGGAGGATGAGACACTTAGACGAGCAGTTGAAAAGTATAAGGGGAAGAGGTGGAAGAAA 398
Query 301 ATAGCGGAATTTTTTCCAGAAAGAACAGAAGTCCAATGCTTGCACCGGTGGCAGAAAGTT 360
|||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 399 ATAGCGGAATTTTTCCCAGAGAGAACACAAGTCCAATGCTTGCACAGGTGGCAGAAAGTT 458
Query 361 CTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGG 400
||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGG 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5