BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324948
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02890.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1563 0.0
> AT5G02890.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:670065-671471 REVERSE LENGTH=1221
Length=1221
Score = 1563 bits (846), Expect = 0.0
Identities = 997/1070 (93%), Gaps = 10/1070 (1%)
Strand=Plus/Plus
Query 1 ATGGAAACCAAAATTCCTAAGTCAATGATCGCCGGAGTACAGAGTGTCATGCCGGTGGAA 60
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 18 ATGGAAACCAAAATCCCTAAGTCAATGATCGCCGGAGTACAGACTGTCATGCCGGTGGAA 77
Query 61 GTGACGCGACACCGGGAAATCCGTTCCATATCCGTCGTAGATCCCGTCGGAGTAGGAATA 120
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 78 GTGACGCAACACCGGGAAATCCGCTCCGTATCCGTCGTAGATCCCGTCGGAGTAGGAATA 137
Query 121 TTCCGAAGAACGCTGAACATAGTTACTTATTACAAAGAAGC-GTGCGATAGTGGTGATGA 179
||||| ||||| | ||||||||||| |||||||||||||| | | |||||||||| |||
Sbjct 138 TTCCGGCGAACGGTTAACATAGTTACGTATTACAAAGAAGCAG-GTGATAGTGGTGGTGA 196
Query 180 GAGAGGGTGGTTAGTCGCCGGGTGGATCAAGGAATCTTTAGGGAGAGCCTTGACGGAGCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GAGAGGGTGGTTAGTCGCCGGGTGGATCAAGGAATCTTTAGGGAGAGCCTTGACGGAGCA 256
Query 240 GCCGATGCTTTCCGGTAGGCTACGGAGGAGGACGACGTCGGCGG-AGGCTGGTCTGGAGT 298
|||||||||||||||||||||||||||||||| |||| ||| || | | |||| ||||||
Sbjct 257 GCCGATGCTTTCCGGTAGGCTACGGAGGAGGAAGACGGCGG-GGAATGATGGTTTGGAGT 315
Query 299 TGGTGGCCAATGACAGTGGTATTAGGATGGTGGAGGCTAAGTTTCCGGCGAGTTTGCCGG 358
| ||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 316 TAGTGGCCAATGATAGTGGTGTGAGGATGGTGGAGGCTAAGTTTCCGGCGAGTCTGCCGG 375
Query 359 ACTTTCTTGAAATGGTGAAGAGAGACAAAAGCAGAGCTGAAGCAGAGACTGTCTTCTGGA 418
| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 376 AGTTTCTTGAAATGGCGAAGAGAGACAAAAGCAGAGCTGAAGCAGAGACTGTTTTCTGGA 435
Query 419 AAGACATTGATGAAGATGAACCTCAATACTCTCCATTGTTCTATGTTCAGGTGACTAATT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AAGACATTGATGAAGATGAACCTCAATACTCTCCATTGTTCTATGTTCAGGTGACTAATT 495
Query 479 TTGAGAGTGGTGGGTACTCAATTGGGATAAGCTGCAGCATCCTAATAGCTGATCTCCTCC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 496 TTGAGAGTGGTGGGTACTCAATTGGGATAAGCTGCAGCATCCTAATAGCTGATCTCTTCC 555
Query 539 TTGAGACAGATTTCTTAACCAAATGGGCTCAAATCCAAACCTCTTTAGCTCATTCTCAAA 598
||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 556 TTGAGACAGGTTTCTTAACCAAATGGGCTCAAATCCAAAGCTCTTTAGCTCA-----AAC 610
Query 599 CTACACTCAAACCAATATTCCACCTCCCTTCTCTCAAACAAGATTTTGGTAATTTCCTCA 658
| |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 611 C-ACACTCAAACCAGTATTCCACCTCCCTTCTCTCAAGCAAGACTTTGGTAATTTCCTCA 669
Query 659 TTGAATTTTCGAGGTCAGCCTCGGTTCTCGACCGCGGTGAACCTGTTGCTTTTCAGGCCA 718
|||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||
Sbjct 670 CTGAATTTTTTAGGTCAGCCTCGGTTCTCGACCGCGGCGAACCTATTGCTTTTCGGGCCA 729
Query 719 AAACATGTCTGAAGATTTCACCAGCCTGCATTGGAACCCGCAAAAGAACGAGGGGGGATG 778
||||||| ||||| || |||||||||||||||| ||| ||||||||||||| |||||||
Sbjct 730 AAACATGCCTGAAAATATCACCAGCCTGCATTGTAACTAGCAAAAGAACGAGTGGGGATG 789
Query 779 TTTTCTTGTTCATTAAGGAACAAGGCGGTGGCAAAAATAGTACCGGATGTGATGGTATGA 838
||||||| ||||| ||||||||| || ||||| |||||||||| ||||||||||||| ||
Sbjct 790 TTTTCTTATTCATCAAGGAACAAAGCAGTGGCGAAAATAGTACTGGATGTGATGGTACGA 849
Query 839 AGGTACAGATACATTCGAGTGATGAAGTGATTAACGGTTGCGATTGCGGTAGTGATTTGG 898
||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 850 AGGTAGAGATACATTCGAGTGATGAAGTGATTAAGGGTTGCGATTGCGGTCGTGATTCAG 909
Query 899 AGGAGACAAATGATGGAGTACTTGATAAGAGTTTAACGTTTGGGGAAAGACTTGAAGTTA 958
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 910 AGGAGACAAATGATGGAGTACTTGATAAGAGTTTATCGTTTGGGGAAAGACTTGAAGTTA 969
Query 959 CTTCATGTTGGGTTGGGTGTGTCTCAAAAGGGGTTGTGTTTGTTTTCCCATCTATTTTTG 1018
|||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 970 CTTCATGTTGGGTTGGGTGTGTCTCAAAAGGGGTAGTATTTGTTTTCCCATCTACTTTTG 1029
Query 1019 AAGATGCCAAGTCGCTAGCCAAATTTATTGTTGCACTGCCAAAAGAGTAA 1068
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GGGATGCCAAGTCGCTAGCCAAATTTATTGTTGCACTGCCAAAAGAGTAA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5