BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324953
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 1594 0.0
> AT5G02950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr5:690782-693010 FORWARD LENGTH=2229
Length=2229
Score = 1594 bits (863), Expect = 0.0
Identities = 1064/1157 (92%), Gaps = 29/1157 (3%)
Strand=Plus/Plus
Query 1 ATGTCTACGGAACCAGAAGGAGTCGAATCTGACTCTAACACTGATTTTTCCGTGAATGCG 60
||||||||||||||||||||||||||||||||||| ||| |||||||| || | ||||||
Sbjct 172 ATGTCTACGGAACCAGAAGGAGTCGAATCTGACTCCAACGCTGATTTTGCCATAAATGCG 231
Query 61 TCGAGGTTTGACAACGG-AGTGGCTCACACATCTGAAACCCTAGCTGATCCCATGAGCTT 119
||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TCGAGTTTTGACTACGGTA-TGGCTCACACATCTGAAACCCTAGCTGATCCCATGAGCTT 290
Query 120 TCAAGCTCAAGACCTGGTAGTGAAGCTCACTGAAGTTGAGCGAAAAGGCTTTGTCTCTGC 179
||||||||| ||| |||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 291 TCAAGCTCAGGACTTGGTAGTGAACCTCACTGGAGTTGAGCGAAAAGTATTTGTCTCTGC 350
Query 180 TCGTGGTGATAAGGATAGTCTCTGTAATGGGGTTGATTATGATGCAGAATCTGGGGATTT 239
||||| ||||||||||||||||||||| ||||||| || | | | ||
Sbjct 351 TCGTGATGATAAGGATAGTCTCTGTAACGGGGTTG---AT--T------T-T---GA--- 392
Query 240 TGCTGGTTCAGATCTGCTTAAGAGCAAGGATAAGAATGG-TTTTGCTGATGAAAATCTGA 298
||||| ||||||||||||||||| |||||||||||| || |||| || | || |||||||
Sbjct 393 TGCTGATTCAGATCTGCTTAAGAACAAGGATAAGAAAGGATTTT-CTAAAGAGAATCTGA 451
Query 299 AGCTTTTTGACTCAGATTTGGTTTGGGCTAAAATAAGAAGCTATCCATGGTGGCCTGGAC 358
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 452 AGCTTTTTGACTCAGATTTGGTTTGGGCTAAACTAAGAAGTTATCCATGGTGGCCTGGAC 511
Query 359 AGGTGTTTGATGCATCTGTTGCATCTAAAGCTGCGAAGAAGCATTTCAAGAAGAAAGGAA 418
||| |||||| ||||||||| ||||||||||||| || ||| ||| ||||||||||
Sbjct 512 TGGTCTTTGATAAATCTGTTGCCTCTAAAGCTGCGATGAGGCACTTC---AAGAAAGGAA 568
Query 419 ATCTCTTGGTTGCGTATTTTGGGGATTGTACTTTTGCTTGGAATAATGCATCTCAGGTAA 478
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 569 ATGTCTTGGTTGCGTATTTTGGGGATTGTACATTTGCTTGGAATAATGCATCTCAGATAA 628
Query 479 AGCCTTTTCATCAGAATTTCTCTCAAATGCAGGAGCAGAGTAATTTGGCTGAGTTTCGTG 538
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 629 AGCCTTTTCATCAGAATTTCTCTCAAATGCAGGAGCAGAGTAACTCCGCTGAGTTTCGTG 688
Query 539 ATGCTATTGATTGTGCTTTGGATGAGGTTTCAAGGAGGGTAGAGTTTGGTTTATCTTGCT 598
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 689 ATGCTATTGATTGTGCTTTGGATGAGGTTTCAAGGAGAGTAGAGTTTGGTTTATCTTGCT 748
Query 599 CTTGTGTCTCAGTGGAAGCCTATAACAAACTCAAGACTCAGAACATAATCAATGCTGGAA 658
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 CTTGTGTTTCAGAGGAAGCCTATAACAAACTCAAGACTCAGAACATAATCAATGCTGGAA 808
Query 659 TTCGTGAGGACTCACGTGTTAGATACGGTGGAGACAAGTTATCGGATGCAATCTCTTTTG 718
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 809 TTCGTGAGGACTCAAGTGTTAGATACGGTGGAGACAAGTTATCGGATGGAATCTCTTTTG 868
Query 719 AACCTGCGAAACTTGTGGATTATATGAAGCATTTAGCTTGCTTTCCTAGCTATGATGCGA 778
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 869 AACCTGCTAAACTTGTGGATTATATGAAGCATTTAGCTTGCTTTCCTTGCTATGATGCGA 928
Query 779 CTGCGAAGCTGCAATTTGTGATAAACCGAGCTCAGGTATTGGCTTTTCAACAATGGAAAG 838
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 929 CTGAGAAGCTGCAATTTGTGATTAACCGAGCTCAGGTATTGGCTTTTCAACAATGGAAAG 988
Query 839 ACTATTCTCCCTTCATTGACTATGAAACATTTCTAAGGTCGGTAGAATCTGCTGCGACCT 898
||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 989 ACTATTCTCACTTCATTGACTATGAAACATTTGTAAGGTCGGTGGAATCTGCTGCGACCC 1048
Query 899 TAGCTTCTCTCCCGGAAGCAAATATGCATGAAGGAATATCTTTCAAAAAGAGAAAGACAT 958
| ||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 1049 TGGCTTCTCTCCCAGAAGTAAATATGGATGAAGGAATATCTGCCAAAAAGAGAAAGACAG 1108
Query 959 ATTACAAAGATAATGCTGAACAGACAAAGGAGAAAG-CTTTGTCGGATTTGATTGTAAAG 1017
|||| ||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||||
Sbjct 1109 ATTATAAAGATAATGCTGAACAGACAAAGGAG-AAGACTTTGTCAGATTTGACTGTAAAG 1167
Query 1018 AAACGCTGTGGGAGCAGATCAACTGAGAAATTGGATGGTAAGTCGCATTCTGAAAAGAAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 AAACGCTGTGGGAGCAGATCAACTGAGAAATTGGATGGTAAGTCGCATTCTGAAAAGAAG 1227
Query 1078 CGTAAGGTTGAGTCTTCGGAATCTGGCAAGTCTGAGAAAAAGATCAAGAACAAC-CAGCA 1136
|||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||
Sbjct 1228 CGTAAGGTTGAGTCTTCGGAATCTGGTAAGTCTGAGAAAAGGATCAAGAA-AAGTCAGCA 1286
Query 1137 AAAAGAGGATTCAGTGT 1153
||| |||||||||||||
Sbjct 1287 AAAGGAGGATTCAGTGT 1303
Score = 1002 bits (542), Expect = 0.0
Identities = 690/757 (91%), Gaps = 27/757 (4%)
Strand=Plus/Plus
Query 1147 TCAGTGTGTGATGCTAATAAACTGCAGAAAG-TGGCTGAACCATGTCACGGAATC-AGAG 1204
|||||| ||||| |||||||||||||| ||| ||||||||| ||||| |||| | |||
Sbjct 1333 TCAGTGGGTGATACTAATAAACTGCAG-AAGACGGCTGAACCGTGTCATGGAA-CTGGAG 1390
Query 1205 TGGAAAATGAGATGAATTCTTTAACTCCTGCACTTAAACCTTGCAGTGATTCTAAATCTA 1264
||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||
Sbjct 1391 TGGAAAATGAGATGAATTCTTTAACTCCTACACTTAAGCCTTGCCGTGCTTCTAAATCTA 1450
Query 1265 CGGAAGTTGAGAATGAGAAAACGAAGAAGCCGAGAC-CCGAAGAGCTTGCTGAAAGAAAG 1323
||||||||||||||||||| || ||||||||||||| | ||||||||||||||||||||
Sbjct 1451 CGGAAGTTGAGAATGAGAAGACTAAGAAGCCGAGACATC-AAGAGCTTGCTGAAAGAAAG 1509
Query 1324 ATTTCTTCTCCTGATGAGATGCTCTCGAGCCTTCACGCTGCC---ACCCCAACAGGG-GT 1379
|||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||| |
Sbjct 1510 ATTTCTTCTCCTGATGAGATGCTCTCAAGCCTTCACGCTGCCAATACCTCAAC-GGGAAT 1568
Query 1380 ACCCGATTCAATCAGA-ATAGACCCCTTGAACTAT-ATAGATTTTGAACAGTTCATTAAT 1437
||| |||||||||| | |||||||||| ||| ||| | |||||||||| |||||||||||
Sbjct 1569 ACCTGATTCAATCA-ACATAGACCCCTCGAATTATGA-AGATTTTGAAAAGTTCATTAAT 1626
Query 1438 GAACTATCTTGCAGTAAACTCAATGATGACTCAAAGAAGGCAAGTATCACTGAAACATCA 1497
||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1627 GAACTGTTTTGCAGTAAACTCAATGGTGACTCAAAGAAGGCAAGTATCACTGAGACATCA 1686
Query 1498 GAACCTTGTGTTCAA-AAAGACTCTGCAG-AG--GAGATCTTACCTGCAAATAAAGAAAT 1553
|||||||||| | || ||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1687 GAACCTTGTGAT-AAGAAAGACTCTGCAGAAGAAGAGATATTACCTGCAAATAAAGAAAT 1745
Query 1554 AACTGGCTCAGGCTCGAAAGAGCAAACTGGTCTCAAGGACTGTTCTGCAGATTCA-T--C 1610
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 1746 CACTGGCTCAGGCTCGAAAGAGCAAATTGGTCTCAAGGACTGTTCTGCAGATTCATTACC 1805
Query 1611 ACCTTATGCGTTAGTCCTCAACTTTGCGGATTCAGGTTTGGTTCCATCTGAAGAAAAGCT 1670
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1806 ACCCTATGCTTTAGTCCTCAACTTTGCGGATTCAGGTTCGGTTCCATCTGAAGAAAAGCT 1865
Query 1671 GAACGAGATATTTAACCGTTATGGTCCTCTCCATGAGTCGAAGACTAAGGTCACGAAGAA 1730
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1866 GAACGAGATATTTAAACGTTACGGTCCTCTCCATGAGTCTAAGACTAAGGTCACGATGAA 1925
Query 1731 GGGCAAGAGAGCCAAAGTTGTGTTCAAAAGAGGCGAAGACGCAAAGACTGCCTTCAGCAG 1790
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1926 GGGTAAGAGAGCCAAAGTTGTGTTCAAAAGAGGGGAAGACGCAAAGACTGCCTTTAGCAG 1985
Query 1791 CGCGGGGAAATACAGCATCTTTGGACCTTCTCTTCTAAGTTACAGACTCGAGTATGTTTG 1850
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 CGCAGGGAAATACAGCATCTTTGGACCTTCTCTTCTAAGTTACAGACTCGAGTATGTTTG 2045
Query 1851 CCCCAAAGCGAAAAAGAGCAACAACATGACTGATTGA 1887
||||||| || |||| | ||||||||||||||||||
Sbjct 2046 CCCCAAA-CGGAAAA-A--AACAACATGACTGATTGA 2078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93423214245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5