BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324957
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1483 0.0
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 448 7e-125
AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 294 1e-78
AT5G02990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 187 2e-46
> AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:703268-704437 FORWARD LENGTH=1065
Length=1065
Score = 1483 bits (803), Expect = 0.0
Identities = 982/1068 (92%), Gaps = 13/1068 (1%)
Strand=Plus/Plus
Query 1 ATG-TTTGCCTCGTGTCTCGAGATTGtttttttCCTTGCCGGAAGACATAATTCTCAATT 59
||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGTTTTG-CTCGTGTCTCGAGATTGTTTTTTTCCTTGCCGGAAGACATCATTCTCAATT 59
Query 60 TTCTTCGTCACCGGACGAAAATGAGACGAAGAAATCATCAGACACTCCTCCGACAGTATT 119
| | |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 60 TCCATCGTTACCGGACGAAAATGAGACGAACAAATCATCAGACTCTCCTCCGACAGTATT 119
Query 120 TTTGTCGTTACCCGACGAAATCATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTATCG 179
|| |||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TTCATCGTTACCGGACGAATTAATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTACCG 179
Query 180 TCCATGTCTATCCTTGGTCAACAAGGATTTCCAATCTCTCATCGCTTCTCCTGATCTCGA 239
||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TCCATCTCTGTCCTTGGTCAACAAGGAATTCCAATCTCTCATCGCTTCTCCTGATCTCGA 239
Query 240 GGCCACGCGATCCCGAATCGGAGTAACAGAGAAGT-ACCTTTATGTCTGCTTAGAGTCGA 298
||||||||| ||||| || |||||||||||||| | |||| ||||||||||| |||||||
Sbjct 240 GGCCACGCGCTCCCGCATAGGAGTAACAGAGAA-TCACCTCTATGTCTGCTTGGAGTCGA 298
Query 299 ATAAGAACAACCCTAATCCTCGCTGGTTCACACTTGCACCAATTCCCAAACAACAGAAAC 358
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 ATAAGAACAACCCTAATCCTCGCTGGTTCACACTTGCACCAATTCCCAAAGAACAGAAAG 358
Query 359 TGAAACCTATC--CCTTTA-TTTCCTTATCGACATCCCACATCATCAACTGTTGTCTCTA 415
||||||||||| || || |||||||||| ||||||||||||||||||| |||||||||
Sbjct 359 TGAAACCTATCATCCCTTCGTTTCCTTATCAACATCCCACATCATCAACTTTTGTCTCTA 418
Query 416 TTGGTTCAGAGATTTACATCATCGGAGGCTTCGTTAAGGGAAGGAGAAGCCAG-AGAGTG 474
|||| ||||||||||||||||||||||||||||||||| ||| ||||||| || |||||
Sbjct 419 TTGGCTCAGAGATTTACATCATCGGAGGCTTCGTTAAGCGAAAGAGAAGC-AGGAGAGTC 477
Query 475 TTGGTTCTAGATTGTCGATCTCATCAATGTCGTAGACTCCCCAACATG-CATCAACCTCG 533
|||||||| |||||||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 478 TTGGTTCTCGATTGTCGATCTCATCAATGTCGTAGGCTCCCCAACATGGC-TCTACCTCG 536
Query 534 AGTTTCTGCAGCCGTTGATGTCATCGACGGTAAGATCTACGTGATTGGAGGATACAA-GT 592
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||
Sbjct 537 AGTTTCTGCAGCCGCTGATGTCATCGACGGTAAGATCTACGTGGTTGGAGGAT-CAAAGT 595
Query 593 CTAACAATATCGACAATTGGGGAGAGGTTTATGATCCAAAGACCCACACGTGGGAGCCAA 652
|||| |||||||||||||||||||| |||| ||||||| ||||||| |||||||||||||
Sbjct 596 CTAAAAATATCGACAATTGGGGAGAAGTTTTTGATCCAGAGACCCAAACGTGGGAGCCAA 655
Query 653 TATTACCCACAACACTTGATCTCACCACTCAAAAGAGTGTGGTTCCAGGTAGCTTGGTAA 712
|||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct 656 TATTTCCCACAACAGTTGATCTCACCACTCAAAAGAGTGTGTTTCCAGGTAAATTGGTTA 715
Query 713 TGGGTGGGAAAGTCTATGGCATGGTTGGTTTGAAGGTTAACTTGAACCCGAATATTTGCT 772
||||||||||||| |||| ||||| ||| ||||| ||||||||||||| ||||| ||||
Sbjct 716 TGGGTGGGAAAGTTTATGACATGGATGGGTTGAAAGTTAACTTGAACCTGAATAGTTGCG 775
Query 773 TGGTAGAGATAGACAACATGATGTGCCAAATATCGGTTTGCAAAGGGATATTACTTTGGT 832
|||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 776 TGGTAGAGATAGACAACATGATGTGCCAAATATCAGTTTGCAAAGGGATACTAGTTTGGT 835
Query 833 ATGATTCAGAGGAAGATTTGGAGTGGAGTAGGTCGGTGGTGTTTGGCCGTCTAGGTCTCA 892
||||||||||||||||||||| ||||| || |||| ||||||||| |||||||||||||
Sbjct 836 ATGATTCAGAGGAAGATTTGGTGTGGAATAAGTCGATGGTGTTTGACCGTCTAGGTCTCG 895
Query 893 ATTGGACTAAGGAATGTAAAAAGGAGATTTGGTGTGCAGAGATATCGTTGGAGAGACGCG 952
|||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 896 ATTGGACTAAGGAAGGTAAAACGGAGATTTGGTGTGCCGAGATATCGTTGGAGAGACGCG 955
Query 953 GTTTTGGAGAGCTTTGGGGATTTGTCGAATGGTCAAACAATGTGTTTACTTACGACGGAT 1012
|||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||
Sbjct 956 GTTTTGGAGAGCTTTGGGGATTCGTCGAATGGTCAAAGAAAGTGTTTACTTATGACGGAT 1015
Query 1013 GTGATTCTCCTTCAGATTTCTTTCTGCATTCGGCTTTTGTGACTTATT 1060
||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 1016 GTGATTCTCCTTCAGATTTCTTTTTGCATTCCGCTATTGTGACTTATT 1063
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 448 bits (242), Expect = 7e-125
Identities = 621/799 (78%), Gaps = 46/799 (6%)
Strand=Plus/Plus
Query 73 GACGAAAATGAGACGAAGAAATCATCAGA--CA-CTCCTCCGACAGT-ATTTT-TGTCGT 127
|||| ||| |||| ||| ||||||||| | || | |||||||| || |||| | ||||
Sbjct 6 GACG-AAA-GAGAAGAATAAATCATCAAACTCACCGCCTCCGAC-GTCGTTTTCT-TCGT 61
Query 128 TACCCGACGAAATCATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTATCGTCCATGTC 187
|||| ||||| ||| ||||||| ||||||||||||||||| |||||| || |||| ||
Sbjct 62 TACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCCAGATTCCATTATCCAACTC 121
Query 188 TATCCTTGGTCAACAAGGATTTCCAATCTCTCATCG-CTTCTCC-TGATCTCGAGGCCAC 245
||||| | ||| ||||| ||||| ||| ||| | | | || || ||| ||| | || ||
Sbjct 122 TATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TC-CCGTGAGCTCCACGCAAC 179
Query 246 GCGATCCCGAATCGGAGTAACAGAGAAG-TACCTTTATGTCTGCTTAGAGTC-GAATAAG 303
||||| | |||||| ||| ||| || | ||| || ||||||||||| | | ||| |
Sbjct 180 ACGATCTTGCATCGGAAAAACCGAG-AGTTTCCTCTACGTCTGCTTAGA-CCTGCATAGG 237
Query 304 AA---C-AACC---C--TAATCCTCGCTGGTTCACACTTGCACCAATTCCCAAACAACAG 354
|| | | || | | ||| || ||||| | | || | || ||| || | |||||
Sbjct 238 AATTGCTATCCAGACTGTCCTCCACGATGGTTTATAGTTTCCCCGATTACC--A-AACAG 294
Query 355 AAACTGAAACCTATCCCTTTATTTCCTTATCGACATCCCACATCATCAACTGTTGTCTCT 414
||||||||||||||||||| || | | | | | || ||| ||||| ||||| ||
Sbjct 295 AAACTGAAACCTATCCCTTCGGTTAC-T-T-G---T--CA-ATCCTCAACCGTTGTATCA 345
Query 415 ATTGGTTCAGAGATTTACATCATCGGAGGCTTCGTTAAGGGA-AGGAGAAGCCA-GAGAG 472
|| |||||| |||||||||| ||||||||||||||| | ||| | || || || ||||
Sbjct 346 ATCGGTTCAAAGATTTACATAATCGGAGGCTTCGTTGATGGACA-TAGTAG-CAGGAGAT 403
Query 473 TGTTGGTTCTAGATTGTCGATCTCATCAATGTCGTAGACTCCCCAACATGCATCAACCTC 532
|| | || || ||||||| ||||||| ||| |||||||||||| | |||| | |||||
Sbjct 404 TGATAGTACTCGATTGTCCATCTCATGGATGGCGTAGACTCCCCGAGATGCGTGTACCTC 463
Query 533 GA-GTTTCTGCAGCCGTTGATGTCATCGACGGTAAGATCTACGTGATTGGAGGATACAAG 591
|| | ||||| | |||||| ||| ||| ||||||||||||||||||||| | | ||
Sbjct 464 GACAAAAC-GCAGCAGCTGATGTAATCAACGATAAGATCTACGTGATTGGAGGCT-CTAG 521
Query 592 -TCTAACAATATCGACAATTGGGGAGAGGTTTATGATCCAAAGACCCACACGTGGGAGCC 650
|| ||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 522 TTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGGAGCC 581
Query 651 AATATTACCCACAACACTTGATCTCACCACTCAAAAGAGTGTGGTTCCAGGTAGCTTGGT 710
| |||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||||
Sbjct 582 AGTATTGCCCACAACACTAGATCTTACTGTTCAAATGAGTGTGGTTCCAGGTAGCTTGGT 641
Query 711 AATGGGTGGGAAAGTCTATGGCATGGTTGGTTTGAAGGTTAACTTGAACCCGAATATTTG 770
|||| |||||||||| |||| |||| ||| |||||| ||||||| | |||||||||
Sbjct 642 AATGAGTGGGAAAGTTTATGACATGAATGGATTGAAGCTTAACTTTCAGAAGAATATTTG 701
Query 771 CTTGGTAGAGATAGACAACATGATGTGCCAAATATCGGTTTGCAAAGGGATATTACTTTG 830
|||||| |||||||| |||||||||||||||| | |||||| ||||| | ||| ||||
Sbjct 702 CTTGGTGGAGATAGAGAACATGATGTGCCAAACAAAGGTTTGTGAAGGGGTGTTAGTTTG 761
Query 831 GTATGATTCAGAGGAAGAT 849
|| ||| |||||||||||
Sbjct 762 GTGTGAACCAGAGGAAGAT 780
> AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:697993-699000 FORWARD LENGTH=1008
Length=1008
Score = 294 bits (159), Expect = 1e-78
Identities = 370/470 (79%), Gaps = 21/470 (4%)
Strand=Plus/Plus
Query 124 TCGTTACCCGACGAAATCATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTATCGTCCA 183
|||||||| |||| ||||| |||||||||||||||||||||||||||| | || |||
Sbjct 46 TCGTTACCATACGACATCATACTCAATTGTTTGGCTCGTGTCTCGAGATACCATTACCCA 105
Query 184 TGTCTATC-CTTGGTCAACAAGGATTTCCAATCTCTCATCGCTTCTCC-TGATCTCGAGG 241
|||||| || | || |||||| ||||||||||||||||| || || ||| ||| | |
Sbjct 106 ACTCTATCTCTCG-TCTCCAAGGAGTTCCAATCTCTCATCGCCTC-CCGTGAGCTCTACG 163
Query 242 CCACGCGATCCCGAATCGGAGTAACAGAGAAGTACCTTTATGTCTGCTTAGAG-TCGAAT 300
| || |||||||| |||||| ||| |||| || ||| ||| |||||||| | | || |
Sbjct 164 CTACACGATCCCGCATCGGAAAAACCGAGAGGTTCCTCTATATCTGCTTAAACCT-GACT 222
Query 301 AAGAACAACCCTAA-TCCTCGCTGGTTCACACTTGCACCAATTCCCAAAC-AACAGAAAC 358
|||| ||||||||| | |||||||||||||||| | ||| ||||||| | |||| ||||
Sbjct 223 AAGAGCAACCCTAAGTA-TCGCTGGTTCACACTTCCCCCAGTTCCCAA-CGAACAAAAAC 280
Query 359 TGAA-ACCTATCCCTTTATTTCCTTATCGACATCCCACAT-CATCAACTGTTGTC-TCTA 415
| | ||| ||||||| ||| |||||| | || || || | ||||| || || || |
Sbjct 281 T-ACTACCCGTCCCTTTGTTTACTTATC-A--TCTCA-ATTCCTCAACCGTC-TCCTCAA 334
Query 416 TTGGTTCAGAGATTTACATCATCGGAGGCTTCGTTAAGGGAAGGAGAAGCCAGAGAGTGT 475
|| ||||||||||||||| ||||||||| ||||| ||||| |||||| ||| || ||
Sbjct 335 CTGATTCAGAGATTTACATAATCGGAGGCCTCGTTTGGGGAAATAGAAGCAAGAAAGCGT 394
Query 476 TGGTTCTAGATTGTCGATCTCATCAAT-GTCGTAGACTCCCCAACATGCATCAACCTCGA 534
|| | || ||||||||||||||| | ||||||||||| || |||| | ||||||
Sbjct 395 CCATTTTTGACTGTCGATCTCATCAAACG-CGTAGACTCCCAAAAATGCGTTTTCCTCGA 453
Query 535 GTTTCTGCAGCCGTTGATGTCATCGACGGTAAGATCTACGTGATTGGAGG 584
| |||||| |||| | ||||||| |||||||||||||| || ||||||||
Sbjct 454 GCTTCTGCTGCCGCTCATGTCATTGACGGTAAGATCTATGTTATTGGAGG 503
> AT5G02990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:700169-702630 FORWARD LENGTH=1647
Length=1647
Score = 187 bits (101), Expect = 2e-46
Identities = 164/194 (85%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 591 GTCTAACAATATCGACAATTGGGGAGAGGTTTATGATCCAAAGACCCACACGTGGGAGCC 650
||| || ||||||| |||||||||||||||||||||||||||| || || ||||||||
Sbjct 441 GTCCAAAAATATCGGGGATTGGGGAGAGGTTTATGATCCAAAGACACATACTTGGGAGCC 500
Query 651 AATATTACCCACAACACTTGATCTCACCA-CTCAAAAGAGTGTGGTTCCAGGTAGCTTGG 709
|||||| || |||||||| |||||||| | |||||||||||||||||| || ||| || |
Sbjct 501 AATATTGCCTACAACACTAGATCTCAC-AGCTCAAAAGAGTGTGGTTCAAGATAGATTAG 559
Query 710 TAATGGGTGGGAAAG-TCTATGGCATGGTTGGTTTGAAGGTTAA-CTTGAACCCGAATAT 767
|||||||||| |||| | |||| ||||| |||||||||| || | || || |||||||
Sbjct 560 TAATGGGTGG-AAAGGTTTATGCCATGGATGGTTTGAAGATTGAGCTA-AAGACGAATAT 617
Query 768 TTGCTTGGTAGAGA 781
||| ||||||||||
Sbjct 618 TTGTTTGGTAGAGA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5