BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324960

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03050.1 | Symbols:  | unknown protein; Has 33 Blast hits to...   693    0.0  


> AT5G03050.1 | Symbols:  | unknown protein; Has 33 Blast hits 
to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:715029-716321 REVERSE LENGTH=802
Length=802

 Score =  693 bits (375),  Expect = 0.0
 Identities = 407/423 (96%), Gaps = 0/423 (0%)
 Strand=Plus/Plus

Query  1    ATGAACACTGAAATGGAAGAAGACGCAGGGAATGGAGGATTTCGGAAACGCATGAGAGCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107  ATGAACACTGAAATGGAAGAAGACGCAGGGAATGGAGGATTTCGGAAACGCATGAGAGCA  166

Query  61   TCTGACGAGGAGGGAAAAGGAGATTCGAGAGATGGAATTAGTCTTGATAATACCATTGAG  120
            ||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct  167  TCTGATGAAGAGGGAAAAGGAGATTCGAGAGATGGAATTAGCCTTGATCATACCATTGAG  226

Query  121  AATGAAGAAACTGAGACGAAACTTGTTGCTTCTGATGAGATGGAACTTAACATTGCTCAG  180
            ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || 
Sbjct  227  AATGAAGAAGCTGAGACGAAACTTGTTGCTTCTGATGAGATGGAACTTAGCATTGCGCAA  286

Query  181  ATTCTCGATAAGATTGAGAGCTTCACACAAACTGTTTCTAACTTGCTGGAAACTGGGAAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  287  ATTCTCGATAAGATTGAGAGCTTCACACAAACTGTTTCTAACTTGCTGGAAACAGGGAAA  346

Query  241  ACAATGTTTAAGGAACTCAGTAACGAATTCGAAGAACGCTTGATCATGATACACAAGGAA  300
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  ACAATGCTCAAGGAACTCAGTAACGAATTCGAAGAACGCTTGATCATGATACACAAGGAA  406

Query  301  CATGTTGAGAAATGGCAGGAGGAGATCAAGGAATTGCGTTTGCTTGATGCATCAAATGAG  360
            |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct  407  CATGTTGAGAAATGGCAGGACGAGATCAAGGAGTTGCGTTTGCTTGATGCATCAAACGAG  466

Query  361  GAGACTACTTCCCTCTTACACAACGCTCGCTATCTGATTCAGAATCCTAGCATCGAGCAA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  467  GAGACTACTTCCCTCTTACACAACGCTCGCTATCTGATTCAGAATCCTAGCATTGAGCAA  526

Query  421  TGA  423
            |||
Sbjct  527  TGA  529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5