BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325029
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03790.1 | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:... 1131 0.0
AT2G18550.1 | Symbols: HB-2, ATHB21, HB21 | homeobox protein 21... 56.5 3e-07
> AT5G03790.1 | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:1004983-1006373
FORWARD LENGTH=710
Length=710
Score = 1131 bits (612), Expect = 0.0
Identities = 681/714 (95%), Gaps = 6/714 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTGGTCAACGACTAGCAACGTAGAAAACGTGAGAGTTGCTTTCATGCCACCGCCA 60
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCA 62
Query 61 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTTACGCAGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTTACGCAG-- 120
Query 121 GGAAATTCATACACGCCTGGCGATACGCAAACCGGACCGGTTATCTCTGTACCGGAATCA 180
| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 G-AAATTCATATACGCCTGGCGATACACAAACCGGACCGGTTATCTCTGTACCGGAATCA 179
Query 181 GAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAACAACGAGATGATAAAGAAG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 180 GAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAAT---GAGATGATAAAAAAG 236
Query 241 AAGAGACTAACGAGTGGACAATTAGCTTCACTTGAACGGAGTTTTCAAGAAGAGATCAAA 300
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 237 AAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAAA 296
Query 301 TTAGATTCAGACAGGAAGGTGAAGCTGTCGCGAGAGCTCGGTCTGCAGCCACGTCAGATA 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 TTAGATTCAGACAGGAAGGTGAAGCTGTCGAGAGAGCTCGGTCTGCAGCCACGTCAGATA 356
Query 361 GCGGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTCGAGCAGTTGTAC 420
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 GCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTGAGCAGTTGTAC 416
Query 421 GACTCGCTTAGACAAGAGTACGACGTCGTTTCCAGGGAGAAACAAATGTTACACGAAGAG 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 417 GACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGATGAG 476
Query 481 GTAAAGAAGCTGAGAGCTATACTAAGAGACCAGGGATTGATCAAGAAGCAAATCTCGGCC 540
|| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 477 GTGAAGAAGCTGAGAGCTTTACTAAGAGACCAGGGTTTGATCAAGAAGCAAATCTCTGCC 536
Query 541 GGGACCATCAAAGTTTCCGGTGAGGAAGACACGGCGGAGATTTCATCGGTGGTAGTAGCT 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 537 GGGACCATCAAAGTTTCCGGTGAGGAAGACACGGTGGAGATTTCATCGGTGGTGGTAGCT 596
Query 601 CATCCAAGAACGGAGAATCTGAACACAAATCAAATCACCGGAGGAAATCAAGTGTACGGT 660
|||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 597 CATCCAAGAACGGAGAATATGAACGCAAATCAAATCACCGGAGGGAATCAAGTTTACGGT 656
Query 661 CAATACAACAATCCGATGCTGGTTGCTTCCTCTGGCTGGCTGTCTTACCCGTGA 714
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 657 CAATACAACAATCCGATGCTGGTTGCTTCCTCTGGCTGGCCGTCATACCCCTGA 710
> AT2G18550.1 | Symbols: HB-2, ATHB21, HB21 | homeobox protein
21 | chr2:8049663-8051213 REVERSE LENGTH=663
Length=663
Score = 56.5 bits (30), Expect = 3e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 367 TGGTTCCAAAACCGCCGTGCACGGTGGAAG 396
||||||||||||||||||||||||||||||
Sbjct 313 TGGTTCCAAAACCGCCGTGCACGGTGGAAG 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5