BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325035

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03850.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   327    2e-89


> AT5G03850.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr5:1028340-1029121 REVERSE LENGTH=467
Length=467

 Score =  327 bits (177),  Expect = 2e-89
 Identities = 189/195 (97%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTCTCAGATTAAGCATGCTGTGGTGGTTAAGGTCATGGGTAGGACTGGTTCAAGG  60
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  71   ATGGATTCTCAGATCAAGCACGCTGTGGTGGTTAAGGTCATGGGTAGGACTGGTTCAAGG  130

Query  61   GGTCAGGTCACTCAGGTTCGAGTGAAGTTTACTGACTCTGATCGTTACATCATGAGGAAT  120
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  131  GGTCAGGTTACTCAGGTTCGAGTGAAGTTTACCGACTCTGATCGTTACATCATGAGGAAT  190

Query  121  GTTAAAGGACCGGTGAGGGAAGGTGATATCCTCACCTTGCTCGAGTCTGAGAGAGAAGCT  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  GTTAAAGGACCAGTGAGGGAAGGTGATATCCTCACCTTGCTCGAGTCTGAGAGAGAAGCT  250

Query  181  AGGAGACTCCGTTGA  195
            |||||||| ||||||
Sbjct  251  AGGAGACTTCGTTGA  265



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8651832372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5