BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325049

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04000.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   444    3e-124


> AT5G04000.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence 
meristem, hypocotyl. | chr5:1079037-1079869 REVERSE 
LENGTH=762
Length=762

 Score =  444 bits (240),  Expect = 3e-124
 Identities = 297/325 (91%), Gaps = 2/325 (1%)
 Strand=Plus/Plus

Query  46   GGTGCAGGTAAAGTAAAAGAGTCAAGGGTAATCTCTCCGGGAGGGTCCAAGATCGAAGAG  105
            ||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||
Sbjct  171  GGTGCAGGTAAAGTAAAAGAGCCGAGGGTATTATCTCCGGGAGGGTCCAAGATCGAAGAG  230

Query  106  AGGCAAATTCACGGTGTTACTAATGAGAATGACATGAGTCAAGGTAAG-AGAGATCAGCC  164
            ||||||| |||| ||| ||||||||||||||| |||||||||| |  | |||||||||||
Sbjct  231  AGGCAAAGTCACAGTGCTACTAATGAGAATGATATGAGTCAAGAT-GGTAGAGATCAGCC  289

Query  165  TCGTGGTGAAGTGAACATGGAAGCTTCTATATCAGCAGAAGATGTGATAAGAGCTGGAGG  224
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  TCATGGTGAAGTGAACATGGAAGCTTCTATATCAGCAGAAGATGTGATAAGAGCTGGAGG  349

Query  225  ACTTGGTGCTAAGGACGACATTGGAAGCTTCCTTCCCGTGGCAAGTGACTCCACTGACTT  284
              |||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct  350  GTTTGGTGCTAAAGATGACATTGGAAGCTTCCTTCCTGTGGCGAGTGACTCGACTGACTT  409

Query  285  TGAGGAATCACTCCGCTCGGCACGTGACTATGAAGAAGCGCAACCGGAGGTTCAAAGACC  344
            |||||||||| |||| || ||||| || ||||||||||||||||| ||||||||||||||
Sbjct  410  TGAGGAATCAATCCGATCTGCACGCGATTATGAAGAAGCGCAACCAGAGGTTCAAAGACC  469

Query  345  GGGTCTTGGCTATCCTAAAGAGTAA  369
            ||||||||||||||| |||| ||||
Sbjct  470  GGGTCTTGGCTATCCGAAAGTGTAA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5