BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325054

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04047.1 | Symbols:  | Plant self-incompatibility protein S1...   521    2e-147


> AT5G04047.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr5:1095057-1095702 REVERSE LENGTH=554
Length=554

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 379/425 (89%), Gaps = 9/425 (2%)
 Strand=Plus/Plus

Query  4    GGA-AAAATTCTTATATGCTTCCT-TTTCTTATTTTCCATCTCCATTCAGAAAATAGACT  61
            ||| |||||||||||||| ||||| |||  ||||||  ||||| || ||| |||||||||
Sbjct  21   GGAGAAAATTCTTATATGTTTCCTCTTT-ATATTTTTTATCTCTATCCAGCAAATAGACT  79

Query  62   CTATT-CTTACATTTAGGCATTACAACATCGAAATTTCGAATCATCTTGCAAGTAACAAA  120
            || || |||| ||||||||||| ||||||| ||||||||||||| |||| | ||||||||
Sbjct  80   CT-TTACTTATATTTAGGCATTTCAACATCCAAATTTCGAATCAACTTGGAGGTAACAAA  138

Query  121  CTGCTTATGATCAATTGTAGATCCGGTAAAGATA-AAGGAACCAAAGTTGAATTTCTTCC  179
            | |||||||||||||||||||||||| ||| | | ||| |||||||||||| ||||||||
Sbjct  139  CAGCTTATGATCAATTGTAGATCCGGCAAACA-ACAAGCAACCAAAGTTGATTTTCTTCC  197

Query  180  CGTTAATGA-TGTATGGACAATCAAATTCACAGTTTACCCAAGAACTTTGATATGGTGCA  238
            | ||||| |  ||||||||| |||| |||||||||| ||||| |||||||||||||||||
Sbjct  198  CTTTAAT-ACCGTATGGACACTCAAGTTCACAGTTTTCCCAAAAACTTTGATATGGTGCA  256

Query  239  ACTTATGGATGGGACCTAATTATGTGCATCATGTGAGGTTTAACGCATTTCTTGGGAAAG  298
            || |||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||
Sbjct  257  ACGTATGGATGGGACCTAACTATGTGCATCATGCGAAGTTTAACGCATTTATTGGGAAAG  316

Query  299  AAAGTTTTATACATGATATATGTGGAGGTAGGAAACCTAACGTATGTTTTTGGCAAGCGC  358
            |||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||
Sbjct  317  AAAGTTTTATACATGATATATGTGGAGGGAGAAAACCTAACATATGTTTCTGGCAAGCGC  376

Query  359  AAGAAGATGGAATATATGTACGCAATAATGCAGCCGGAACCTTTAAGTTAATGTATAAAT  418
            ||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct  377  AAGAAGATGGAATTTATGTACGAAATAATGCAACTGGAACCTTTAAGTTAATGTATAAAT  436

Query  419  GGGAT  423
            |||||
Sbjct  437  GGGAT  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5