BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325069
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04220.2 | Symbols: SYTC, ATSYTC, NTMC2TYPE1.3, NTMC2T1.3, S... 1903 0.0
> AT5G04220.2 | Symbols: SYTC, ATSYTC, NTMC2TYPE1.3, NTMC2T1.3,
SYT3 | Calcium-dependent lipid-binding (CaLB domain) family
protein | chr5:1155865-1158876 REVERSE LENGTH=1999
Length=1999
Score = 1903 bits (1030), Expect = 0.0
Identities = 1192/1265 (94%), Gaps = 31/1265 (2%)
Strand=Plus/Plus
Query 439 GTTAAGTTCTATGAGACCAATGAGAAGGAACTTCTGTTTGAACCATCAATAAAATGGGCA 498
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 644 GTTAAGTTCTATGAGACCAATGAGAAGGAGCTTCTGTTTGAACCATCAATCAAATGGGCA 703
Query 499 GGCAATCCCAACATTGTTTTGGTGCTTAAGGTTCTCTCTTTACGAATTAGAGTTCAGCTC 558
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 704 GGCAATCCCAACATTGTTTTGGTGCTAAAGGTTCTGTCTTTACGAATTAGAGTTCAGCTA 763
Query 559 GTAGATCTCCAGTTTTTTGCGATAGTGCGTGTAGCTCTGAAGCCTCTTCTGCCGACCTTC 618
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 764 GTAGATCTCCAGTTTTTTGCAATAGTGCGTGTAGCTTTGAAGCCTCTTCTGCCGACATTC 823
Query 619 CCTTGTTTCGGAATGGTTGTAGTTTCATTAATGGAAAAGCCACATGTTGATTTTGGATTG 678
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 824 CCTTGTTTCGGAATGGTTGTAGTTTCGTTAATGGAAAAGCCACATGTTGATTTTGGATTG 883
Query 679 AAAGTGCTTGGTGGAGATGTCATGTCCATACCGGGTCTCTACAGATATGTTCAGGAAACT 738
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 884 AAAGTGCTTGGTGGAGATCTCATGTCCATACCGGGGCTCTACAGATATGTTCAGGAAACT 943
Query 739 ATTAAAAGGCAAGTTTCAAGTATGTACCATTGGCCACAAGTGCTTGAGATACCTATTCTT 798
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 944 ATTAAAAGGCAAGTTTCAAGCATGTACCATTGGCCACAAGTGCTTGAGATACCTATTCTT 1003
Query 799 GATGCTTCAACAGCTTCTGTAAAGAAGCCTGTTGGATTACTACATGTGAACATTATTCGA 858
||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1004 GATTCTTCAACAGCGTCTGTAAAGAAGCCTGTTGGATTACTACATGTGAGCATTCTTCGA 1063
Query 859 GCTAGTAATCTCCTCAAGAAGGATTTGCTGGGAACATCTGACCCTTATGTCAAGCTTAGC 918
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1064 GCTCGTAATCTCCTCAAGAAGGATTTGTTGGGAACATCCGACCCTTATGTCAAGCTTAGC 1123
Query 919 TTAACCGGAGAGAAGCTTCCAGCAAAGAAAACCACCATAAAGAAGAGGAACTTAAACCCG 978
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TTAACTGGAGAAAAGCTTCCAGCAAAGAAAACCACCATAAAGAAGAGGAACTTAAACCCG 1183
Query 979 GAATGGAACGAACACTTTAAGCTCATCGTGAAGGACCCAAAATCACAAGTCCTTCAACTA 1038
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1184 GAATGGAACGAACACTTTAAGCTCATCGTCAAGGACCCAAACTCACAAGTCCTTCAACTA 1243
Query 1039 GAAGTTTTTGACTGGGACAAGGTCGGTGGGCACGACAGATTGGGAATGCAGATGATCCCC 1098
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1244 GAAGTCTTTGACTGGGACAAGGTCGGTGGGCACGACAGATTAGGAATGCAGATGATCCCT 1303
Query 1099 CTGCAAAAGATTAACCCGGGTGAGAAGAAGGCGTTTAATCTTGATCTGATCAAGAACTCA 1158
|||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 1304 TTGCAAAAGATTAACCCGGGTGAGAGGAAGGAGTTTAATCTTGATCTGATTAAGAACTCA 1363
Query 1159 AATGTTGTTATGGATTCTGGAGACAAGAAAAAGAGAGGAAGATTAGAG-TTGGATCTCAG 1217
|||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 1364 AATGTTGTTATGGATTCTGGAGACAAGAAAAAAAGAGGAAGATTAGAGGTTG-ATCTCAG 1422
Query 1218 ATATGTGCCATTCAGAGAAGAAAGCCTTAAGAGTAGAAATAAAAGTCAGGATGAGTACCA 1277
|||||||||||||||||||||||| ||||| ||||||| | | || | | | |
Sbjct 1423 GTATGTGCCATTCAGAGAAGAAAGCATTAAGCGTAGAAA-A---G--AG-A-G----C-A 1469
Query 1278 GAGAAAAGAAAGCAGAGACGAGAAATCATCAGAGGACGACGATTTTCTCAGCCAAGCTGG 1337
||||| || | | | | |||||||||||||| ||||||||||||||||| ||
Sbjct 1470 GAGAA--GA--G-A-A-A-------TCATCAGAGGACGATGATTTTCTCAGCCAAGCCGG 1515
Query 1338 TCTACTCTCGGTTGCAGTCCAATCTGCCAAAGATGTCGAGGGCAAGAAGAAACACTCGAA 1397
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1516 TCTACTCTCGGTTGCAGTCCAATCTGCAAAAGATGTCGAGGGCAAGAAGAAACACTCGAA 1575
Query 1398 CCCTTATGCTGTTGTTCTCTTCAGAGGAGAAAAGAAGAAAACAAAGATGCTGAAGAAAAC 1457
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1576 CCCTTATGCTGTTGTTCTCTTCAGAGGAGAAAAGAAGAAAACTAAGATGCTGAAGAAAAC 1635
Query 1458 ACGAGACCCTCGATGGAACGAGGAATTCCAGTTTACACTAGAGGAGCCTCCAGTGAAAGA 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 ACGAGACCCTCGATGGAACGAGGAATTCCAGTTTACACTAGAGGAGCCTCCAGTGAAAGA 1695
Query 1518 GAGTATACGCGTTGAGGTCATGAGTAAAGGAACCGGCTTTCACTTTCGATCAAAGGAGGA 1577
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1696 GAGTATACGCGTTGAGGTCATGAGTAAAGGAACCGGCTTTCACTTTCGATCCAAGGAGGA 1755
Query 1578 ACTAGGACATGTAGACATAAATCTTGG-CGATGTTGTTAACAATGGAAGGATCAACCAGA 1636
|||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||
Sbjct 1756 ACTAGGACATGTAGACATAAATCT-GGACGATGTAGTTGACAATGGAAGGATCAACCAGA 1814
Query 1637 AATACCATCTTATCAATTCCAGAAACGGCATAATTCACATTGAGATCCGTTGGACAACTA 1696
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1815 AATACCATCTTATCAATTCCAGAAACGGCATTATTCACATTGAGATCCGTTGGACAACTA 1874
Query 1697 GTTAA 1701
|||||
Sbjct 1875 GTTAA 1879
Score = 619 bits (335), Expect = 2e-176
Identities = 370/387 (96%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTCTTCACCAGTGTGTTGGGGATCATCGGTTTTGTAATCGGAATCCCTATCGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ATGGGTTTCTTCACCAGTGTGTTGGGGATCATCGGTTTTGTAATCGGAATCCCTATCGGA 316
Query 61 CTCATCCTTGGTTTCTTCGTCTTGATTTATTCTCAGCCTACCCACCAAGAGTATCCACCT 120
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 317 CTCATCCTTGGTTTCTTCGTCTTGATTTATTCTCAGCCTTCACACCAAGAGTATCCACCT 376
Query 121 GCGAGGCCACTAGTTGAAACTAGCATCAGTGTTCTTCTTGATCTTTTACCAGAGATTCCA 180
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 377 GCGAGGCCACTAGTTGAGACTAGTATCAGTGTTCTTCTTGATCTTTTACCAGACATTCCA 436
Query 181 TTGTGGATGAAGAATCCAGATTATGAAAGAGTGGACTGGTTTAACAAATTTATCTCATAC 240
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 437 TTATGGATGAAGAATCCAGATTATGAAAGAGTGGACTGGTTCAACAAATTTATCTCATAC 496
Query 241 ATGTGGCCTTACCTCGATAACGCTGTTTGCGGTATCATCCGGAGTTCTGCACAAC-TTAT 299
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| || |
Sbjct 497 ATGTGGCCTTACCTCGATAAGGCTGTTTGCGGGATCATCCGGAGTTCTGTACAACCTT-T 555
Query 300 ATTTGCAGATTTTGTTGGGACCTTCTGTATAGAATCCATTGAGTTCGAAAATTTGAGTCT 359
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ATTTGCAGATTATATTGGCACCTTCTGTATAGAATCCATTGAGTTCGAAAATTTGAGTCT 615
Query 360 TGGACCGCTTCCACCCACAGTTCACGG 386
|||| |||||||||| |||||||||||
Sbjct 616 TGGAACGCTTCCACCTACAGTTCACGG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5