BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325092
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04490.1 | Symbols: VTE5 | vitamin E pathway gene 5 | chr5:1... 1408 0.0
> AT5G04490.1 | Symbols: VTE5 | vitamin E pathway gene 5 | chr5:1279760-1281669
FORWARD LENGTH=1104
Length=1104
Score = 1408 bits (762), Expect = 0.0
Identities = 865/916 (94%), Gaps = 2/916 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCAACCTTACCTCTATCTCCGATTAGCCATCAGTTGTGTCGGTTCGGGAGCAAC 60
||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 108 ATGGCAGCAACCTTACCTCTATCTCCGATCAATCATCAGTTGTGTCGGTTCGGGAACAAC 167
Query 61 GCTTTGACAACGCATCGGTTCTGTTCGCCTAGCTTCTTGATTTCTTCTCCTTGTTTCATC 120
||||||| || || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 168 TCTTTGACGACTCACCGGTTCTGTTCTCCTGGCTTCTTGATTTCTTCTCCTTGTTTCATT 227
Query 121 GCCTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCC 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GGTTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCA 287
Query 181 GCAGTTGCGACGAATTCGATGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTCGGTGGA 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 288 GCAGTTGCGACGAATTCGCTGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTTGGTGGA 347
Query 241 GCTTACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTGATTCAACAGAGT 300
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 348 GCATACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTCATTCAACAGAGT 407
Query 301 TTGAGTAGAAAGCTTGTACATATACTCTCAGGTCTGCTTTTCGTACTCGCGTGGCCAATC 360
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 408 TTGAGCAGAAAGCTTGTGCATATACTCTCAGGTCTGCTTTTCGTACTTGCGTGGCCAATC 467
Query 361 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTCGTTCCGTTAGTTAATGGCTTA 420
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 468 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTTGTTCCGTTAGTGAATGGCTTA 527
Query 421 AGGCTTGTTATTAACGGACTATCTGTTTCCCCCAATTCTACT-CTTATCAAATCTGTCAC 479
||||||||||||||||||||||| ||||||| ||||| | | || |||||||| |||||
Sbjct 528 AGGCTTGTTATTAACGGACTATCCATTTCCCCAAATTCGA-TGCTAATCAAATCCGTCAC 586
Query 480 AAGAGAAGGGAGACCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTTTAGCTCTTCT 539
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 587 AAGAGAAGGGAGAGCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTCTAGCTCTTCT 646
Query 540 TATCTCTGCCATTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTGGCAATGAT 599
| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 647 TTTCTCTGCGGTTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTAGCAATGAT 706
Query 600 GTGCGGTGGCGATGGAATAGCTGATATAATGGGACGAAAGTTTGGGTCAGCTAAGATACC 659
||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 707 GTGTGGTGGCGATGGAATAGCTGATATAATGGGACGTAAGTTTGGGTCAACTAAGATACC 766
Query 660 TTACAACCCAAGAAAGAGCTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TTACAACCCAAGAAAGAGTTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 826
Query 720 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 886
Query 780 GACCTTCCAGAGAGTCGCAATGGTCTCAATGGTAGCTACGGTGGTCGAGTCGCTACCTAT 839
|||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 887 GACCTTGCAGAGAGTAGCAATGGTCTCAATGGTCGCCACGGTAGTCGAGTCGCTACCCAT 946
Query 840 CACAGATCAATTAGACGACAACGTTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 899
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 947 CACCGATCAATTAGACGACAATATTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 1006
Query 900 AAGTTTCGGATATTAG 915
||||||||||||||||
Sbjct 1007 AAGTTTCGGATATTAG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5