BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325092 Length=915 Score E Sequences producing significant alignments: (Bits) Value AT5G04490.1 | Symbols: VTE5 | vitamin E pathway gene 5 | chr5:1... 1408 0.0 > AT5G04490.1 | Symbols: VTE5 | vitamin E pathway gene 5 | chr5:1279760-1281669 FORWARD LENGTH=1104 Length=1104 Score = 1408 bits (762), Expect = 0.0 Identities = 865/916 (94%), Gaps = 2/916 (0%) Strand=Plus/Plus Query 1 ATGGCTGCAACCTTACCTCTATCTCCGATTAGCCATCAGTTGTGTCGGTTCGGGAGCAAC 60 ||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |||| Sbjct 108 ATGGCAGCAACCTTACCTCTATCTCCGATCAATCATCAGTTGTGTCGGTTCGGGAACAAC 167 Query 61 GCTTTGACAACGCATCGGTTCTGTTCGCCTAGCTTCTTGATTTCTTCTCCTTGTTTCATC 120 ||||||| || || ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 168 TCTTTGACGACTCACCGGTTCTGTTCTCCTGGCTTCTTGATTTCTTCTCCTTGTTTCATT 227 Query 121 GCCTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCC 180 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 GGTTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCA 287 Query 181 GCAGTTGCGACGAATTCGATGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTCGGTGGA 240 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 288 GCAGTTGCGACGAATTCGCTGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTTGGTGGA 347 Query 241 GCTTACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTGATTCAACAGAGT 300 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 348 GCATACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTCATTCAACAGAGT 407 Query 301 TTGAGTAGAAAGCTTGTACATATACTCTCAGGTCTGCTTTTCGTACTCGCGTGGCCAATC 360 ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 408 TTGAGCAGAAAGCTTGTGCATATACTCTCAGGTCTGCTTTTCGTACTTGCGTGGCCAATC 467 Query 361 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTCGTTCCGTTAGTTAATGGCTTA 420 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 468 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTTGTTCCGTTAGTGAATGGCTTA 527 Query 421 AGGCTTGTTATTAACGGACTATCTGTTTCCCCCAATTCTACT-CTTATCAAATCTGTCAC 479 ||||||||||||||||||||||| ||||||| ||||| | | || |||||||| ||||| Sbjct 528 AGGCTTGTTATTAACGGACTATCCATTTCCCCAAATTCGA-TGCTAATCAAATCCGTCAC 586 Query 480 AAGAGAAGGGAGACCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTTTAGCTCTTCT 539 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 587 AAGAGAAGGGAGAGCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTCTAGCTCTTCT 646 Query 540 TATCTCTGCCATTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTGGCAATGAT 599 | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 647 TTTCTCTGCGGTTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTAGCAATGAT 706 Query 600 GTGCGGTGGCGATGGAATAGCTGATATAATGGGACGAAAGTTTGGGTCAGCTAAGATACC 659 ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 707 GTGTGGTGGCGATGGAATAGCTGATATAATGGGACGTAAGTTTGGGTCAACTAAGATACC 766 Query 660 TTACAACCCAAGAAAGAGCTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 719 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 767 TTACAACCCAAGAAAGAGTTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 826 Query 720 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 886 Query 780 GACCTTCCAGAGAGTCGCAATGGTCTCAATGGTAGCTACGGTGGTCGAGTCGCTACCTAT 839 |||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| || Sbjct 887 GACCTTGCAGAGAGTAGCAATGGTCTCAATGGTCGCCACGGTAGTCGAGTCGCTACCCAT 946 Query 840 CACAGATCAATTAGACGACAACGTTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 899 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 947 CACCGATCAATTAGACGACAATATTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 1006 Query 900 AAGTTTCGGATATTAG 915 |||||||||||||||| Sbjct 1007 AAGTTTCGGATATTAG 1022 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44708390830 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5