BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325121
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04850.2 | Symbols: VPS60.2 | SNF7 family protein | chr5:140... 845 0.0
AT3G10640.1 | Symbols: VPS60.1 | SNF7 family protein | chr3:332... 754 0.0
> AT5G04850.2 | Symbols: VPS60.2 | SNF7 family protein | chr5:1408019-1409893
REVERSE LENGTH=1133
Length=1133
Score = 845 bits (457), Expect = 0.0
Identities = 485/499 (97%), Gaps = 0/499 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAATCTTTGGTGCGAAGAATAACAAAGAGCCTCCACCTTCTATTCAGGATGCC 60
||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct 88 ATGAAGAGAATCTTTGGAGCGAAGAATAACAAAGAGCCTCCTCCGTCTATTCAAGATGCC 147
Query 61 TCTGATCGGATCAATAAAAGAGGAGAGTCAGTGGAAGATAAAGTTAAGAGGCTTGATGCT 120
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 148 TCTGATCGGATCAATAAAAGAGGAGATTCAGTGGAAGAGAAAGTTAAGAGGCTTGATGCT 207
Query 121 GAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCCTGCTCAAGAAGCT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 208 GAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCCTGCTCTAGAAGCT 267
Query 181 ATCAAAGCTCGTGCTATGAGAGTCCTCAAGCAAAAGAAGATGTACGAAGGACAACGTGAC 240
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 268 ATCAAAGCTCGTGCTATGAGAGTTCTCAAGCAAAAGAAGATGTATGAAGGACAACGTGAC 327
Query 241 ATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGCTGAAAGCCTTAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 328 ATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGCTGAAGGCCTTAAA 387
Query 301 GATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGTTGAAAGGAATGATG 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 388 GATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGCTGAAAGGAATGATG 447
Query 361 AAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGATGGACTTAATGGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGATGGACTTAATGGAT 507
Query 421 GAGAGTTCTGAAATTCAAGAGACACTCGGTAGGAGCTATAATGTTCCTGATGACATTGAC 480
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 508 GAGAGTTCTGAAATTCAAGAGACACTTGGTAGGAGCTACAATGTTCCTGATGACATTGAC 567
Query 481 GAAGATGACCTCTTGGGCG 499
|||||||||||| ||||||
Sbjct 568 GAAGATGACCTCCTGGGCG 586
Score = 350 bits (189), Expect = 1e-95
Identities = 203/210 (97%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 499 GAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACTGAAGCAGACGGAGTGCCTTCC 558
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 697 GAGCTTGATGCTCTTGAAGCTGACATGGGGAACGAGACTGAAGCAGACGGAGTGCCTTCT 756
Query 559 TATCTCCAACCCGATAAGGAACCGGATCTTAATGATGAACTGAACTTGCCTCCAGCACCA 618
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 757 TATCTCCAACCCGATAAGGAACCGGATCTTAATGATGAGCTCAACTTGCCTTCAGCACCA 816
Query 619 ATGGGGCATACAGGAGCACCACCCGGACGAGCTCAGGCTGAGGATGAATGGGGATTACCA 678
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 817 ATGGGGCATACAGGAGCTCCACCCGGACGAGCTCAGGCTGAAGATGAATGGGGATTACCA 876
Query 679 GCGGTACCACGTGCATCACTTCGGGGCTAA 708
||||||||||||||||||||||||||||||
Sbjct 877 GCGGTACCACGTGCATCACTTCGGGGCTAA 906
> AT3G10640.1 | Symbols: VPS60.1 | SNF7 family protein | chr3:3323310-3325039
REVERSE LENGTH=1033
Length=1033
Score = 754 bits (408), Expect = 0.0
Identities = 617/717 (86%), Gaps = 18/717 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAGAATCTTT-GGTGCGAAGAATAACAAAGAGCCTCCACCTTCTATTCAGGATGC 59
|||| |||| | ||| || ||||| || |||| ||||||||| || || |||||||||||
Sbjct 135 ATGAGGAGAGT-TTTCGGCGCGAAAAAGAACACAGAGCCTCCTCCGTCCATTCAGGATGC 193
Query 60 CTCTGATCGGATCAATAAAAGAGGAGAGTCAGTGGAAGATAAAG-TTAAGAGGCTTGATG 118
|||||||||||| |||||||||||||| || || |||||| ||| | |||| ||||||||
Sbjct 194 CTCTGATCGGATAAATAAAAGAGGAGATTCGGTAGAAGAT-AAGATAAAGAAGCTTGATG 252
Query 119 CTGAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCCTGCTCAAGAAG 178
||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||
Sbjct 253 TTGAGCTCTGCAAATACAAAGAACAGCTCAAAAAGACCAGACCTGGTCCTGCTCAAGAAG 312
Query 179 CTATCAAAGCTCGTGCTATGAGAGTCCTCAAGCAAAAGAAGATGTACGAAGGACAACGTG 238
|| ||||||||||||||||| |||| |||||||| ||||| ||||| ||||||||||| |
Sbjct 313 CTGTCAAAGCTCGTGCTATGCGAGTTCTCAAGCAGAAGAAAATGTATGAAGGACAACGCG 372
Query 239 ACATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGCTGAAAGCCTTA 298
||||||||||||||||||| || || || |||||||||||||| || |||||| | || |
Sbjct 373 ACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCA 432
Query 299 AAGATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGTTGAAAGGAATGA 358
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 433 AAGATGCTCAACAAACTATGACAGCACTAAAATCTGCGAACAAGGAGTTGAAAGGAATGA 492
Query 359 TGAAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGATGGACT-TAATG 417
||||||||||||||||||||||||| |||||||| ||||| || |||||||| | | |||
Sbjct 493 TGAAAACCGTCAAGATTCAAGATATTGATAATTTACAAGACGAGATGATGGA-TCTGATG 551
Query 418 GATGAGAGTTCTGAAATTCAAGAGA-CACTCGGTAGGAGCTATAATGTTCCTGATGACAT 476
|||| ||||||||||||||||| | |||| ||||||||||| ||| ||||||||| | |
Sbjct 552 GATGTTAGTTCTGAAATTCAAGA-ATCACTTGGTAGGAGCTACAATATTCCTGATGGCCT 610
Query 477 TGACGAAGATGACCTCTTGGGCGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGAC 536
|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGACGAGGATGACCTCATGGGAGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGAC 670
Query 537 TGAAGCAGACGGAGTGCCTTCCTATCTCCAACCCGATA-AGGAACCGGATCTTAATGAT- 594
|||||||| ||| ||||||| ||||||||||| |||| || ||| | || | | |||
Sbjct 671 CGAAGCAGATGGAATGCCTTCTTATCTCCAACCTGATACAGAAACTG-AT-T-AC-GATA 726
Query 595 GA-A-CTGAACTTGCCTCCAGCACCAATGGGGCATACA-GGAGCACCACCCGGACGAGCT 651
| | || ||||||||| ||||||||| || || | | ||||| |||| ||| |||||
Sbjct 727 GCGAGCTTAACTTGCCTGCAGCACCAACAGGACACA-ATGGAGCTCCACATGGAAGAGCT 785
Query 652 CAGGCTGAGGATGAATGGGGATTACCAGCGGTACCACGTGCATCACTTCGGGGCTAA 708
||||||||||| |||| ||||||||||| || ||||| || || || ||||| |||
Sbjct 786 CAGGCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAA 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5