BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325141
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05070.1 | Symbols: | DHHC-type zinc finger family protein ... 2017 0.0
> AT5G05070.1 | Symbols: | DHHC-type zinc finger family protein
| chr5:1496855-1498544 FORWARD LENGTH=1386
Length=1386
Score = 2017 bits (1092), Expect = 0.0
Identities = 1195/1245 (96%), Gaps = 6/1245 (0%)
Strand=Plus/Plus
Query 1 ATGCAGAGGGAGAGAATGAGCAAGAAGAAGATTAGTCAGGTTCATTGCATTCCCTCTGGT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 42 ATGCAGAGGGAGAGAATGAGCAAGAAGAAGATTAGTCAAGTTCATTGCATTCCCTCTGGT 101
Query 61 GATCATATTCTCATGACGGCTTCTTCTTCTAAACACA-TCTCTCATATCCGATTCTACAA 119
||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||
Sbjct 102 GATCATATTCTCATGACGGCTTCTTCTTCCAAACACATTC-CTCATATCAGATTCTACAA 160
Query 120 AGCCTGGAAGGGTAACAACAGATTTTGCTGTGGTGGTAGACTAATCTTTGGTCCTGATGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AGCCTGGAAGGGTAACAACAGATTTTGCTGTGGTGGTAGACTAATCTTTGGTCCTGATGT 220
Query 180 ATCATCTCTGTTCCTAACCTCCTTCTTGATTGGTGCCCCTGCGCTTACATTCTGTATAAG 239
||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 221 ATCATCTCTGTACCTAACCTCCTTCTTGATTGGAGCTCCTGCGCTTACATTCTGCATAAG 280
Query 240 GATGCTCTTGTGGATCAAAA-ATGGAGATCCTTTCTTCAACTATACCGTTCTAGCTTCAG 298
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 281 GATGCTCGTGTGGATCAAAAGA-GGAGATCCTTTCTTCAACTATACCGTTCTAGCTTCAG 339
Query 299 GATTTATCCTCACCATCTTGGATTTTACGTTTCTATTGTTGACATCAGCTAGGGATCCAG 358
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 340 GATTTATCCTCACCCTCTTGGATTTTACGTTTCTAATGTTGACATCAGCTAGGGATCCAG 399
Query 359 GAATCATCCCAAGGAATAAAACATCAATGAATCTTGAAGATGATTCAGATAGTTCCTTAA 418
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 400 GAATCATCCCAAGGAACAAAACATCAATGATTCTTGAAGATGATTCAGATAGTTCCTTGA 459
Query 419 CACAATCTATGGAATGGGTCAACAACAAAACTCCTAATCTCAAGATTCCAAGAACGAAAG 478
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 460 CACAATCTATGGAATGGGTCAACAACAAAACTCCTAATCTCAAGATTCCTAGAACCAAAG 519
Query 479 ACGTTTTCGTCAATGGTTACACTATCAAAGTCAAGTTCTGCGATACTTGCTTGCTCTATC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ACGTTTTCGTCAATGGTTACACTATCAAAGTCAAGTTCTGCGATACTTGCTTGCTCTATC 579
Query 539 GTCCACCTCGTGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACC 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACC 639
Query 599 ATTGTCCATGGGTTGGACAATGCATTGCCAGAAGAAACTACCCGTTCTTCATTTGCTTCA 658
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 640 ATTGTCCATGGGTTGGTCAGTGCATTGCCCGAAGAAACTACCCGTTCTTCATTTGCTTCA 699
Query 659 TCTCATCTTCAACATTGCTATGCATATATGTCTTTGTGTTCTCCTGGATCAATCTGATTC 718
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 700 TCTCATCTTCAACATTGCTATGCATATATGTTTTTGTGTTCTCCTGGATCAACCTGATTA 759
Query 719 GACAACCTGGGAAGCTATGGAGAACAATGTCTTATGATATAGTGTCAGTCATTCTTATCG 778
|||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |
Sbjct 760 GACAACCTGGGAAGCTATGGAGGACAATGTCTGATGATATAGTGTCTGTCATTCTTATTG 819
Query 779 TATATTCATTCGTCGCTGTCTGGTTCGTTGGTGGACTTACCATTTTCCACTTCTATCTCA 838
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 820 TATATACATTTGTCGCTGTCTGGTTCGTTGGTGGCCTTACCATTTTCCACTTCTATCTCA 879
Query 839 TGTCTACAAACCAGACAACATATGAGAATTTCCGGTACCGTTACGATAAGAAAGAAAATC 898
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 880 TGTCTACAAACCAGACAACATATGAGAATTTCCGGTACCGTTATGATAAGAAAGAAAATC 939
Query 899 CTTACAAGAGAGGGTTACTGAAGAATGTTAAAGAAGTATTATTTGCCAAGATCCCGCCTT 958
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 940 CTTACAAGAGAGGGTTACTGAAGAATGTTAAAGAAGTACTATTTGCCAAGATCCCGCCTT 999
Query 959 CGCAACTAGATCTCAGAGCAATGGTCCCGGAAGAAGATGACATGACAATAACATCTATCG 1018
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 1000 CGCAACTAGATCTCAGAGCAATGGTCCCGGAAGAAGATGACATGACTATAGCATCTAACG 1059
Query 1019 GAT-CCGAGTATGAGTCAGAGTATAGCTCCTCCGTGAGATACGATACAGAAATGGGAGGC 1077
|| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1060 -ATTCCGAGTATGAGTCAGAGTATACCTCCTCCGTGAGATACGATACAGAGATGGGAGGC 1118
Query 1078 AAGCTCACTAAAAGGGAGAGTCCGAGGAAGCTTCCTTTGCCAACACGAAACTTAGATGAT 1137
||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1119 AAGCTCATTAAAAGGGATAGCCCTAGGAAGCTTCCTTTGCCAACACGAAACTTAGATGAT 1178
Query 1138 ATCAAGGAAATTAGTGATAACTACGACAGATCTACGACAACTAGAGATGATGCTTCTGAG 1197
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1179 ATCAAGGACATTAGTGATAACTACGACAGATCTACGACAACTAGAGAGGATGCTTCTGAC 1238
Query 1198 CGCGATCCTTCGTTCTTCTCATCTCAACTAGACTTGCCCAAGTAA 1242
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1239 CGCGATCCTTCGTTTTTCTCATCTCAACTAGACTTGCCCAAGTAA 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5