BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325146
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05120.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 706 0.0
> AT5G05120.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:1511232-1511837 FORWARD LENGTH=606
Length=606
Score = 706 bits (382), Expect = 0.0
Identities = 544/620 (88%), Gaps = 19/620 (3%)
Strand=Plus/Plus
Query 1 ATGTTGTCCTCTGATTCGAATTACGCTAGTGATATTAGCGACAATGCCTCCGCCACCGGA 60
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGTTGTCCTCGGACTCGAATTACGCTAGTGATATTAGCGACGATGCCTCCGCCACCGGA 60
Query 61 TCGATAGAGAATCCAATGTACAAATGCAAGTATTGTCCTAGGAAATTCGATAAAACACAA 120
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TCGATAGAGAATCCTATATACAAATGCAAGTATTGTCCTAGGAAGTTCGATAAAACACAA 120
Query 121 GCATTGGGTGGTCATCAAAATGCTCACAAGAA-GGAGAGAGGGGTaaaaaaaCAACATGA 179
||||| ||||||||||||||||| |||| ||| |||||||| ||| |||||||||| |
Sbjct 121 GCATTAGGTGGTCATCAAAATGCACACA-GAAAGGAGAGAGAGGTCGAAAAACAACAAAA 179
Query 180 AGCATTTTTGGCGCATTTGAACCAACC-GAAACCAGACCTTTACTTGTACTCGTATTTGC 238
||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| |
Sbjct 180 AGCATTTTTGGCGCATTTGAACCGACCAGAA-CCAGATCTTTACGCGTACTCGTATTCGT 238
Query 239 ATCCGCATTCATTTCCTAACCAGTACGCACTCTCACCGGGATTTGAACAACGTC-GTTAC 297
||| ||||||||||||||||| ||||||||| |||||||||||||||| | || || ||
Sbjct 239 ATCATCATTCATTTCCTAACCAATACGCACTCCCACCGGGATTTGAACAGCCTCAGT-AC 297
Query 298 AAAGTTGATAGA--ATTGACAATATGTCCATGGTCTACAACCAATATATGGGATCTTCAA 355
|||||||||||| || |||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 298 AAAGTTGATAGATCAT--ACAAGATGTCCATGGTCTACAACCAATATGTGGGATCCTCAA 355
Query 356 GCTCTGGCTTTTTAGGACTACGAAGTGATCCAAGTCAAAGAATGGACCGGGGTTCGACCT 415
||||| ||||| |||||||| |||||| ||||||||| ||||| ||| || || |||||
Sbjct 356 GCTCTAGCTTTGCAGGACTACAAAGTGACCCAAGTCAAGGAATGAACCAGGATTGGACCT 415
Query 416 TTAACGGGATCTCATCCCAAACTCAACCTCAACCTCAACCGCTATCGTCTGCATCGTCAC 475
||| ||||||| ||| || | | ||| ||||||||||||| |||||||| | | ||
Sbjct 416 TTACCGGGATCCCATTCCTACCCCAATCTCAACCTCAACCACTATCGTC---A-C--CA- 468
Query 476 CAGTGTGTTTAGATCTTTGTCTTGGTGTTGGTAGCTCCCAAACCCAACCACAACCTGAAG 535
| | ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 469 -A-TATGTTTGGATCTTTGCCTTGGCATTGGTAGCTCCCAAACCCAACCACAACCTCAAG 526
Query 536 AACCAAACGATGCAACAGAAGAGATGGATGCTAAGAAAGAAAATGATGGTTCTTCTCTTT 595
||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 527 AACCAAATGATGCAACAGAAGAGATGGATGCTGAGAAAGAAAATGATGGTTCTTCCCTTT 586
Query 596 CTCTCTCACTCAAGCTATGA 615
||||||||||||| || |||
Sbjct 587 CTCTCTCACTCAAACTGTGA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5