BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325146 Length=615 Score E Sequences producing significant alignments: (Bits) Value AT5G05120.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 706 0.0 > AT5G05120.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr5:1511232-1511837 FORWARD LENGTH=606 Length=606 Score = 706 bits (382), Expect = 0.0 Identities = 544/620 (88%), Gaps = 19/620 (3%) Strand=Plus/Plus Query 1 ATGTTGTCCTCTGATTCGAATTACGCTAGTGATATTAGCGACAATGCCTCCGCCACCGGA 60 ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGTTGTCCTCGGACTCGAATTACGCTAGTGATATTAGCGACGATGCCTCCGCCACCGGA 60 Query 61 TCGATAGAGAATCCAATGTACAAATGCAAGTATTGTCCTAGGAAATTCGATAAAACACAA 120 |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 TCGATAGAGAATCCTATATACAAATGCAAGTATTGTCCTAGGAAGTTCGATAAAACACAA 120 Query 121 GCATTGGGTGGTCATCAAAATGCTCACAAGAA-GGAGAGAGGGGTaaaaaaaCAACATGA 179 ||||| ||||||||||||||||| |||| ||| |||||||| ||| |||||||||| | Sbjct 121 GCATTAGGTGGTCATCAAAATGCACACA-GAAAGGAGAGAGAGGTCGAAAAACAACAAAA 179 Query 180 AGCATTTTTGGCGCATTTGAACCAACC-GAAACCAGACCTTTACTTGTACTCGTATTTGC 238 ||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| | Sbjct 180 AGCATTTTTGGCGCATTTGAACCGACCAGAA-CCAGATCTTTACGCGTACTCGTATTCGT 238 Query 239 ATCCGCATTCATTTCCTAACCAGTACGCACTCTCACCGGGATTTGAACAACGTC-GTTAC 297 ||| ||||||||||||||||| ||||||||| |||||||||||||||| | || || || Sbjct 239 ATCATCATTCATTTCCTAACCAATACGCACTCCCACCGGGATTTGAACAGCCTCAGT-AC 297 Query 298 AAAGTTGATAGA--ATTGACAATATGTCCATGGTCTACAACCAATATATGGGATCTTCAA 355 |||||||||||| || |||| |||||||||||||||||||||||| ||||||| |||| Sbjct 298 AAAGTTGATAGATCAT--ACAAGATGTCCATGGTCTACAACCAATATGTGGGATCCTCAA 355 Query 356 GCTCTGGCTTTTTAGGACTACGAAGTGATCCAAGTCAAAGAATGGACCGGGGTTCGACCT 415 ||||| ||||| |||||||| |||||| ||||||||| ||||| ||| || || ||||| Sbjct 356 GCTCTAGCTTTGCAGGACTACAAAGTGACCCAAGTCAAGGAATGAACCAGGATTGGACCT 415 Query 416 TTAACGGGATCTCATCCCAAACTCAACCTCAACCTCAACCGCTATCGTCTGCATCGTCAC 475 ||| ||||||| ||| || | | ||| ||||||||||||| |||||||| | | || Sbjct 416 TTACCGGGATCCCATTCCTACCCCAATCTCAACCTCAACCACTATCGTC---A-C--CA- 468 Query 476 CAGTGTGTTTAGATCTTTGTCTTGGTGTTGGTAGCTCCCAAACCCAACCACAACCTGAAG 535 | | ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 469 -A-TATGTTTGGATCTTTGCCTTGGCATTGGTAGCTCCCAAACCCAACCACAACCTCAAG 526 Query 536 AACCAAACGATGCAACAGAAGAGATGGATGCTAAGAAAGAAAATGATGGTTCTTCTCTTT 595 ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 527 AACCAAATGATGCAACAGAAGAGATGGATGCTGAGAAAGAAAATGATGGTTCTTCCCTTT 586 Query 596 CTCTCTCACTCAAGCTATGA 615 ||||||||||||| || ||| Sbjct 587 CTCTCTCACTCAAACTGTGA 606 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29638146730 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5