BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325150
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05160.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2994 0.0
AT3G42466.1 | Symbols: | Pseudogene of AT2G26730; leucine-rich... 457 2e-127
> AT5G05160.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:1527975-1530062 FORWARD LENGTH=1993
Length=1993
Score = 2994 bits (1621), Expect = 0.0
Identities = 1825/1924 (95%), Gaps = 12/1924 (1%)
Strand=Plus/Plus
Query 1 ATGACTTCTTCTCACACCACCTTGGCGGCTGCCTCCTTCTTCTTCCTGTTACTCGCAGCA 60
|||| |||||||||||| |||| | ||||| |||||||||||||| |||||||| |||
Sbjct 26 ATGAATTCTTCTCACACTGCCTTCGTTGCTGCTTCCTTCTTCTTCCTCTTACTCGCCGCA 85
Query 61 ACCGCGGTTTTGGTTTCAGCCGATTTAGCATCAGACGAAGAAGCCCTTCTCAACTTTGCA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 86 ACCGCGGTTTTGGTTTCAGCCGATTTAGCATCAGACGAACAAGCCCTTCTCAACTTTGCA 145
Query 121 GCATCAGTCCCACATCCACCCAAACTCAACTGGAACAAGAACTTCTCTCTCTGCTCCTCA 180
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 146 GCATCAGTCCCACATCCACCAAAACTCAACTGGAACAAGAACCTCTCTCTCTGCTCTTCA 205
Query 181 TGGATCGGCATTACCTGTGATGACTCCAACCGCACCAGCCGCGTTGTAGCAGTTCGTCTT 240
|||||||||||||| |||||||| ||||||| |||||||||||||||||| || ||||||
Sbjct 206 TGGATCGGCATTACTTGTGATGAATCCAACCCCACCAGCCGCGTTGTAGCTGTCCGTCTT 265
Query 241 CCTGGAGTTGGCCTCTACGGCTCAATCCCACCTGCTACATTAGGCAAACTTGACGCTCTC 300
|| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 266 CCAGGAGTTGGCCTCTACGGCTCAATCCCTCCTGCCACATTAGGCAAACTAGACGCTCTC 325
Query 301 AAAGTCCTTAGCCTCAGATCCAACTCTCTCTTTGGAACTTTGCCTTCTGATATTCTCTCA 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 326 AAAGTCCTTAGCCTCAGATCCAACTCTCTCTTTGGAACTTTACCTTCTGATATTCTCTCA 385
Query 361 CTCCCTTCTCTTCAATACCTTTATCTCCAACACAACAACTTCTCCGGCGAACT---CACT 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 386 CTCCCTTCTCTTGAATACCTTTATCTCCAACACAACAACTTCTCCGGCGAACTCACCACT 445
Query 418 AATTCTCTGCTGTCGATCTCCAAGCATCTTGTTGTCTTGGACTTGTCTTATAACTCTTTA 477
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 446 AATTCTTTGCCGTCGATCTCCAAGCAGCTTGTTGTCTTGGACTTGTCTTATAACTCTTTA 505
Query 478 TCTGGTAACATTCCTTCCGGTATCCGGAACTTGTCTCAGATCACTGTATTGTACCTTCAA 537
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 506 TCTGGTAACATTCCTTCCGGTCTCCGGAACTTGTCTCAGATCACTGTATTGTACCTTCAA 565
Query 538 AACAACTCTTTTGATGGTCCAATTGATTCTCTTGATCTCCCAAGTGTAAAAGTTGTAAAT 597
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 566 AACAACTCTTTTGATGGTCCCATTGATTCTCTTGATCTCCCGAGTGTAAAAGTTGTAAAT 625
Query 598 TTGAGCTATAACAACTTGAGTGGACCCATCCCTGAGCATCTCAAGGGA-TCGCCGGAAAA 656
||||||||||||||||| |||||||||||||||||||||||||| | | || |||||| |
Sbjct 626 TTGAGCTATAACAACTTAAGTGGACCCATCCCTGAGCATCTCAA-GAAGTCACCGGAATA 684
Query 657 TTCTTTCATCGGAAACTCATTACTATGTGGTTTACCTCTGAATCCATGTTCCGGAAAAGC 716
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 685 TTCTTTCATCGGAAACTCATTACTATGTGGTCCACCTCTGAATGCATGTTCCGGAGGAGC 744
Query 717 CATCTCTCCGTCTTCAAATTTGCCAAGACCGTTGACAGAGAATCTCCATCCTGTTCGGAG 776
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 745 CATCTCTCCGTCTTCAAATTTGCCTAGACCGTTGACAGAGAATCTCCATCCTGTCCGGAG 804
Query 777 GAGACAGAGTAAAGCTTATATAATCGCCATTGTAGTCGGATGCTCTGTAGCCGTTCTTTT 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 805 GAGACAGAGTAAAGCTTATATAATCGCCATTGTAGTCGGATGCTCTGTGGCCGTTCTTTT 864
Query 837 CCTTGGAATTGTTTTCTTAGTTTGTCTGGTGAA-AAGGACGAAGAAAGAAG-A--AGGCG 892
|||||| ||||||||||| |||||||||||||| || |||||||||||||| | |||||
Sbjct 865 CCTTGGGATTGTTTTCTTGGTTTGTCTGGTGAAGAA-GACGAAGAAAGAAGAAGGAGGCG 923
Query 893 GTGAAGGAGGGCGAACGCAGATAGGTGGAGTGAATAGCAAGAAACCGCAGGATTTCGGGA 952
||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 924 GTGAAGGAGTGCGAACGCAGATGGGGGGAGTGAATAGCAAGAAACCGCAGGATTTCGGGA 983
Query 953 GCGGAGTTCAAGATCCAGAGAAGAACAAGCTGTTCTTTTTCGAGAGATGCAATCACAATT 1012
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct 984 GCGGAGTTCAAGATCCAGAGAAGAACAAGCTCTTCTTCTTCGAAAGATGCAATCATAATT 1043
Query 1013 TCGATCTTGAGGATCTCTTGAAAGCTTCTGCTGAAGTTCTTGGTAAAGGGAGTTTCGGAA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TCGATCTTGAGGATCTCTTGAAAGCTTCTGCTGAAGTTCTTGGTAAAGGGAGTTTCGGAA 1103
Query 1073 CGGCCTACAAGGCTGTGCTTGAGGACACAACCGCAGTCGTGGTGAAACGTTTAAGAGAAG 1132
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1104 CGGCCTACAAGGCCGTGCTTGAGGACACAACCGCAGTGGTGGTGAAACGTTTAAGAGAAG 1163
Query 1133 TCGTGGCTAGCAAGAAAGAGTTTGAACAGCAAATGGAGGTTGTTGGGAAGATTAACCAGC 1192
||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1164 TCGTGGCGAGCAAGAAAGAGTTTGAACAGCAAATGGAGATAGTTGGGAAGATTAACCAGC 1223
Query 1193 ATTCGAATTTCGTACCGCTCCTTGCTTATTACTATTCGAAAGACGAGAAGCTGTTGGTCT 1252
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1224 ATTCTAATTTCGTACCACTCCTCGCTTATTACTATTCGAAAGACGAGAAGCTATTGGTCT 1283
Query 1253 ACAAGTACATGACGAGAGGAAGCTTGTTCGGGATCATGCATGGAAACAGAGGAGACAGAG 1312
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1284 ACAAGTACATGACGAAAGGAAGCTTGTTCGGGATCATGCACGGAAACAGAGGAGACAGAG 1343
Query 1313 GAGTCGACTGGGAAACGCGGATGAAGATCGCGACTGGGACTTCAAAAGCAATCTCTTACC 1372
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1344 GAGTCGACTGGGAAACGCGGATGAAGATCGCGACAGGGACTTCAAAAGCAATCTCTTACC 1403
Query 1373 TTCACTCTTTGAAATTCGTTCACGGAGACATCAAATCGTCCAACATACTTCTCACTGAAG 1432
||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1404 TTCACTCCTTAAAATTCGTTCACGGAGACATCAAATCATCAAACATACTTCTCACTGAAG 1463
Query 1433 ACCTTGAGCCATGTCTATCGGACACATCTTTAGTCACACTCTTCAACCTCCCAACTCACA 1492
|||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1464 ACCTTGAGCCATGTCTGTCCGACACATCTTTAGTCACTCTCTTCAACCTTCCAACTCACA 1523
Query 1493 CACCGCGAACCATCGGCTACAATGCTCCTGAAGCTATTGAGACAAGGAGAGTCAGTCAAA 1552
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1524 CACCGCGAACCATTGGCTACAATGCTCCTGAAGTTATTGAGACGAGGAGAGTCAGTCAAA 1583
Query 1553 GGTCAGACGTTTATAGCTTTGGTGTGGTGATTCTCGAAATGCTAACCGGGAAGACACCTT 1612
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 GATCAGACGTTTATAGCTTTGGTGTGGTGATTCTCGAAATGCTAACCGGGAAGACACCTT 1643
Query 1613 TAACTCAGCCTGGTCTAGAGGATGAGCGTGTGGTCATTGATCTTCCAAGATGGGTTCGGT 1672
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1644 TAACTCAGCCTGGTCTCGAGGATGAGCGTGTCGTCATTGATCTTCCGAGATGGGTTCGGT 1703
Query 1673 CTGTTGTGAGAGAAGAGTGGACTGCAGAGGTTTTCGATGTGGAGCTCTTGAAGTTTCAGA 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 CTGTTGTGAGAGAAGAGTGGACTGCAGAGGTTTTCGATGTGGAGCTCTTGAAGTTTCAGA 1763
Query 1733 ACATAGAAGAGGAGATGGTTCAGATGCTTCAGCTAGCGTTGGCTTGTGTCGCAAGGAATC 1792
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1764 ACATTGAAGAGGAGATGGTTCAGATGCTTCAGCTAGCGTTGGCCTGTGTTGCAAGGAATC 1823
Query 1793 CAGAATCGAGGCCAAAGATGGAAGAGGTTGCAAGGATGATTGAAGATGTGAGGAGATGTG 1852
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct 1824 CAGAATCGAGGCCAAAGATGGAAGAGGTCGCGAGGATGATTGAAGATGTGAGGAGAT-TG 1882
Query 1853 -ATCAGTCGCCGCAGTTACAGCAAAACATAACATCCTCAGAGGCTACTTCGAATGTCTCT 1911
||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1883 GATCAGTCTCAGCAGTTACAGCAAAACAGAACATCCTCAGAGGCTACTTCCAATGTCTCT 1942
Query 1912 GAAT 1915
||||
Sbjct 1943 GAAT 1946
> AT3G42466.1 | Symbols: | Pseudogene of AT2G26730; leucine-rich
repeat transmembrane protein kinase, putative | chr3:14599197-14604217
FORWARD LENGTH=789
Length=789
Score = 457 bits (247), Expect = 2e-127
Identities = 407/478 (85%), Gaps = 36/478 (8%)
Strand=Plus/Plus
Query 1452 GGACACATCTTTAGTCACACTCTTCAACCTCCCAACTCACACACCGCGAACCATCGGCTA 1511
|||||||||||||||||| ||||||||||||| |||||| |||| |||||| || || |
Sbjct 332 GGACACATCTTTAGTCACTCTCTTCAACCTCCTAACTCATACACTGCGAACTATTGGATC 391
Query 1512 CAATGCTCCTG-AA-GCTATTGAGACAAGGAGAGTCAGTCAAAGGTCAGACGTTTATAGC 1569
| ||||||||| || || ||||||| | ||||| ||||||| ||||| |||||||||
Sbjct 392 CTATGCTCCTGCAATGC--TTGAGAC-A--AGAGTAAGTCAAATATCAGATGTTTATAGC 446
Query 1570 TTTGGTGTGGTGATTCTCGAAATGCTAACCGGGAAGACACCTTTAACTCAGCCTGGTCTA 1629
|||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 447 TTTGGTTTGGTGATTCTCGAAATGCTAACCGGAAAGACACC-TTAACTCAGCCAGGTCTT 505
Query 1630 GAGGATGAGCGTGTGGTCATTGATCTTCCAAGATGGGTTCGGTCTGTTGTGA-GAGAAGA 1688
|||||| ||||||||||||||||||||| |||||||||| |||||||||||| | ||| |
Sbjct 506 GAGGATCAGCGTGTGGTCATTGATCTTCTAAGATGGGTTTGGTCTGTTGTGAGGGGAA-A 564
Query 1689 GTGGACTGCAGAGGTT-TTCGATGTGGAGCTCTTGAAGTTTCAGAACAT-----A-G--- 1738
|||||||| ||||||| || |||| |||||||| |||||||||||||| | |
Sbjct 565 GTGGACTGTAGAGGTTATT-AATGTCGAGCTCTTAAAGTTTCAGAACATAGAAGAGGTCC 623
Query 1739 AAGAGGAGATGGTTCAGATGCTTCAGCTAGCGTTGGCTTGTGTCGCAAGGAATCCAGAAT 1798
|||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |
Sbjct 624 AAGAGGAGATGGTTCAGATGCTTCAGCTAGCGTTCGCTTGTCTCGCAAGGA-TCCAGAGT 682
Query 1799 CGAGGCCAAAGATGGAAGAGGTTGCAAGGATGATTGAAGATGTGAGGAGATGTGATCAGT 1858
|||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 683 GGAGGCCAAAGATGGAAGAGGTTGCAAGGATTATTGAAGATGTGAG-A--TGTGATCAGT 739
Query 1859 CGCCGCAGTTACAGCAAAACATAACATCCTCA-GAGGCTACTTCGAATGTCTCTGAAT 1915
||| || || ||| || |||||| || ||| || ||||| ||||||||||||
Sbjct 740 CGC---AG---CA--AAA-CAGGACATCCCCATGAG-CTGCTTCGGATGTCTCTGAAT 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94929230595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5