BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325157
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05240.1 | Symbols: | Uncharacterised conserved protein (UC... 1962 0.0
> AT5G05240.1 | Symbols: | Uncharacterised conserved protein (UCP030365)
| chr5:1553814-1556556 REVERSE LENGTH=2128
Length=2128
Score = 1962 bits (1062), Expect = 0.0
Identities = 1388/1535 (90%), Gaps = 63/1535 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGAACACGACAATGTTTCTGGAGGGTTTTCTCCGATTCCCAGATCCGACTTAAAG 60
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 327 ATGGAAGAACACGACGCTGTTTCTGGAGGGTGTTCTCCGATTCCCAGATCCGACTTAAAG 386
Query 61 ATCGGAGGCGCTGAATTGGATGAAAGACTGAAGTTGAGTAAAATTCAACCTGTTACACCA 120
||||| ||| ||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 387 ATCGGCGGCAATGAATTGGATGAAAGACAGGAGTTGAGTAAAATTGAACCTGTTACACCA 446
Query 121 ACTCTAAATTCAGGTGGCACTG--C----TTCTAAGGACATTGAAAAAGCCAATGAAATG 174
||||||||||||||| ||||| | |||||| ||| ||||||||||||||| |||
Sbjct 447 ACTCTAAATTCAGGTAACACTGTTCATGGTTCTAAAGACGTTGAAAAAGCCAATGGCATG 506
Query 175 TCTCAAGTTGGTAAAGTTTCGGAGAGTTTTGTTAAAGAAGGGATGACTAATAAGACTCAA 234
|||||||||||||||||||| ||||||||||||| |||||||| || || ||||||| ||
Sbjct 507 TCTCAAGTTGGTAAAGTTTCAGAGAGTTTTGTTACAGAAGGGAAGAATATTAAGACTGAA 566
Query 235 CTG-T--TAGGTCAAAAGGTCAAGTCTTCTTCCAGTAAGCTTGTTCTCAACGCAGATGTT 291
||| | | |||||| |||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 567 CTGTTGGTGGGTCAAGAGGTTAAGTCTTCTTCCAGTAAGCTTGTTCTCAACACTGATGTT 626
Query 292 GATTGTGATAAGAGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 351
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GATTGTGATAAGCGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 686
Query 352 TTGAATGATGATTTAACATCGGTTTGCTCGTCCAGGAGAAGCCAGAAAACTAGTTCAATG 411
||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||
Sbjct 687 TTGAATGATGATTTAACTTCGGTTTGCTCCTCTAGGATAAGCCAGAAAACTAGTTCAATG 746
Query 412 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTCCTGTTGCGAAAAAAGATCCAATGAAG 471
||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||
Sbjct 747 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTTCTGTAGCCAAAAGAGATCCAATGAAG 806
Query 472 GTCTGGACAGAAATGAAACAGAACGGGTATCTCTCTAATCCGAACGGCGGGATTTCAACG 531
|| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 807 GTTTGGACAGAGATGAAACAGAACGGGTATCTCTCTAATCCGAATGGTGGGATTTCAACG 866
Query 532 ACATCAAGTAGCTGTCTCGTATCCTCTTCTCATGGAGGGATACCGGCTCCAAGGAAACGT 591
|||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct 867 ACATCAAGTAGCTGTCTCATATCATCTTCTCATGGAGGGATACCGGCTCCAAAGAAACGT 926
Query 592 GGACGC-AAA--AAGAATAATATTGACGCTGCAATGGCGAAGAAGAGAAAGATAGAGATT 648
|||||| ||| |||| ||||| |||||||||| ||||||||||||||||||| |||
Sbjct 927 GGACGCAAAACCAAGATTAATAATGACGCTGCAGTGGCGAAGAAGAGAAAGAT--AGA-- 982
Query 649 GCAAGGAAGGAAGAAGTTGACAGGTTTGCTAGGCTAGCTGCTCCTAGTGGACTGCTTAAT 708
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 983 --AAGGAAGGAAGAAGTTGACAGGTTTGCTAGGCTTGCTGCTCCTAGCGGACTGCTTAAC 1040
Query 709 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 1100
Query 769 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAACTTCTATCATTCTACATTGAGGCAT 828
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1101 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAA---CTATCATTCTACATTGAGGCAT 1157
Query 829 AGTAATAGTGCAGTTGGGAGTCCTAGGAAAAACTTGGGAGATGTGAACACTAATGCCTTC 888
||||||||||||| ||||||||||||||||||||||||||| || | | || |
Sbjct 1158 AGTAATAGTGCAGATGGGAGTCCTAGGAAAAACTTGGGAGA--TG--C-C---TG----C 1205
Query 889 AGATCTG-ATTTTAACCAAGGATTCAAGTATGCCATGCCAAAAGGTAAGTACTCTATGCG 947
||||||| ||||| |||||| |||| |||||||| |||| |||| || ||||||||||||
Sbjct 1206 AGATCTGAATTTT-ACCAAGTATTCCAGTATGCCTTGCCTAAAGATATGTACTCTATGCG 1264
Query 948 CTACTACGATGAGAAATGCGCAGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1007
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1265 CTACTACGCCGAGAAATGCGCTGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1324
Query 1008 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGCCAGTTCCTTGTCGAGCGAGGACGC 1067
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1325 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGACAGTTCCTTGTCGAGTGAGGACGC 1384
Query 1068 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACTGTAGCTTCTCAATG 1127
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1385 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACAGTAGCTTCTCAATG 1444
Query 1128 GTTGGAATTGCTTCATCAGGACCTCAAAGGCCGTGTTTCCGCTCTTCGGCGTAGCAAGAA 1187
|||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||
Sbjct 1445 GTTGGAATTGCTTCATCAGGACATCAAAGGCCGTGTTTCTGCTCTTCGACGTAGCAGGAA 1504
Query 1188 GAGGGTTCGTGCAGTTGTCACGACAGAGCTACCTTTCTTGATAACGAAAGAGTTTCCACC 1247
||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||||| |
Sbjct 1505 GAGGGTTCGTGCAGTTGTCACGATAGAGTTACCTCACTTAATAAGGAAAGAGTTTCCAGC 1564
Query 1248 CGATCAAGAAAATGACCCAACTTTACT-CTTCGATGGGGCTTC-AAGGGCTTCAACAGTC 1305
||||||||||||||||||||| |||| ||| | ||||||||| || |||||||||||||
Sbjct 1565 TGATCAAGAAAATGACCCAACTCTACTCCTT-GGTGGGGCTTCGAA-GGCTTCAACAGTC 1622
Query 1306 GATGTCCACAAGACCAGATGGATGACTTTGTTTAAGCAACTCGAACACAAGCTCTCAGAA 1365
||| |||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1623 GATATCCATAAGAGCAGATGGATGACTCTGTTTAAGCAACTCGAACACAAGCTATCAGAA 1682
Query 1366 GAAGAGTCACAATTGTTTGTGAACTTTGAAAATATTCAGGAAAGCTGGTTAAACCAAGTG 1425
||||||| | || | ||| ||||||||||||||||||||||
Sbjct 1683 GAAGAGT--C------------AC-------A-ATT--GGAAAGCTGGTTAAACCAAGTG 1718
Query 1426 AGATATCTGCAATCACATTGTGATCAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1485
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1719 AGATATATGCAATCACATTGTGATGAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1778
Query 1486 AATTTCTTACACTTAGGGATGCCACTGGACTCTAG 1520
||||||||||| |||||||||||| ||||||||||
Sbjct 1779 AATTTCTTACAGTTAGGGATGCCATTGGACTCTAG 1813
Score = 178 bits (96), Expect = 2e-43
Identities = 104/108 (96%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1582 AGAGCTGTAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1641
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 AGAGCTGCAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1871
Query 1642 ATTTTCTCGACCTGCAGTTTTCTGGAGGAGAACATAACCTGTAGCTGA 1689
|| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1872 ATATACTCGACCTGCAGTTTTCTAGAGGAGAACATAACCTGTAGCTGA 1919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5