BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325157 Length=1689 Score E Sequences producing significant alignments: (Bits) Value AT5G05240.1 | Symbols: | Uncharacterised conserved protein (UC... 1962 0.0 > AT5G05240.1 | Symbols: | Uncharacterised conserved protein (UCP030365) | chr5:1553814-1556556 REVERSE LENGTH=2128 Length=2128 Score = 1962 bits (1062), Expect = 0.0 Identities = 1388/1535 (90%), Gaps = 63/1535 (4%) Strand=Plus/Plus Query 1 ATGGAAGAACACGACAATGTTTCTGGAGGGTTTTCTCCGATTCCCAGATCCGACTTAAAG 60 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 327 ATGGAAGAACACGACGCTGTTTCTGGAGGGTGTTCTCCGATTCCCAGATCCGACTTAAAG 386 Query 61 ATCGGAGGCGCTGAATTGGATGAAAGACTGAAGTTGAGTAAAATTCAACCTGTTACACCA 120 ||||| ||| ||||||||||||||||| | |||||||||||||| |||||||||||||| Sbjct 387 ATCGGCGGCAATGAATTGGATGAAAGACAGGAGTTGAGTAAAATTGAACCTGTTACACCA 446 Query 121 ACTCTAAATTCAGGTGGCACTG--C----TTCTAAGGACATTGAAAAAGCCAATGAAATG 174 ||||||||||||||| ||||| | |||||| ||| ||||||||||||||| ||| Sbjct 447 ACTCTAAATTCAGGTAACACTGTTCATGGTTCTAAAGACGTTGAAAAAGCCAATGGCATG 506 Query 175 TCTCAAGTTGGTAAAGTTTCGGAGAGTTTTGTTAAAGAAGGGATGACTAATAAGACTCAA 234 |||||||||||||||||||| ||||||||||||| |||||||| || || ||||||| || Sbjct 507 TCTCAAGTTGGTAAAGTTTCAGAGAGTTTTGTTACAGAAGGGAAGAATATTAAGACTGAA 566 Query 235 CTG-T--TAGGTCAAAAGGTCAAGTCTTCTTCCAGTAAGCTTGTTCTCAACGCAGATGTT 291 ||| | | |||||| |||| |||||||||||||||||||||||||||||| | |||||| Sbjct 567 CTGTTGGTGGGTCAAGAGGTTAAGTCTTCTTCCAGTAAGCTTGTTCTCAACACTGATGTT 626 Query 292 GATTGTGATAAGAGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 351 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 627 GATTGTGATAAGCGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 686 Query 352 TTGAATGATGATTTAACATCGGTTTGCTCGTCCAGGAGAAGCCAGAAAACTAGTTCAATG 411 ||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||| Sbjct 687 TTGAATGATGATTTAACTTCGGTTTGCTCCTCTAGGATAAGCCAGAAAACTAGTTCAATG 746 Query 412 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTCCTGTTGCGAAAAAAGATCCAATGAAG 471 ||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||| Sbjct 747 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTTCTGTAGCCAAAAGAGATCCAATGAAG 806 Query 472 GTCTGGACAGAAATGAAACAGAACGGGTATCTCTCTAATCCGAACGGCGGGATTTCAACG 531 || |||||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 807 GTTTGGACAGAGATGAAACAGAACGGGTATCTCTCTAATCCGAATGGTGGGATTTCAACG 866 Query 532 ACATCAAGTAGCTGTCTCGTATCCTCTTCTCATGGAGGGATACCGGCTCCAAGGAAACGT 591 |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| Sbjct 867 ACATCAAGTAGCTGTCTCATATCATCTTCTCATGGAGGGATACCGGCTCCAAAGAAACGT 926 Query 592 GGACGC-AAA--AAGAATAATATTGACGCTGCAATGGCGAAGAAGAGAAAGATAGAGATT 648 |||||| ||| |||| ||||| |||||||||| ||||||||||||||||||| ||| Sbjct 927 GGACGCAAAACCAAGATTAATAATGACGCTGCAGTGGCGAAGAAGAGAAAGAT--AGA-- 982 Query 649 GCAAGGAAGGAAGAAGTTGACAGGTTTGCTAGGCTAGCTGCTCCTAGTGGACTGCTTAAT 708 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 983 --AAGGAAGGAAGAAGTTGACAGGTTTGCTAGGCTTGCTGCTCCTAGCGGACTGCTTAAC 1040 Query 709 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 1100 Query 769 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAACTTCTATCATTCTACATTGAGGCAT 828 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1101 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAA---CTATCATTCTACATTGAGGCAT 1157 Query 829 AGTAATAGTGCAGTTGGGAGTCCTAGGAAAAACTTGGGAGATGTGAACACTAATGCCTTC 888 ||||||||||||| ||||||||||||||||||||||||||| || | | || | Sbjct 1158 AGTAATAGTGCAGATGGGAGTCCTAGGAAAAACTTGGGAGA--TG--C-C---TG----C 1205 Query 889 AGATCTG-ATTTTAACCAAGGATTCAAGTATGCCATGCCAAAAGGTAAGTACTCTATGCG 947 ||||||| ||||| |||||| |||| |||||||| |||| |||| || |||||||||||| Sbjct 1206 AGATCTGAATTTT-ACCAAGTATTCCAGTATGCCTTGCCTAAAGATATGTACTCTATGCG 1264 Query 948 CTACTACGATGAGAAATGCGCAGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1007 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1265 CTACTACGCCGAGAAATGCGCTGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1324 Query 1008 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGCCAGTTCCTTGTCGAGCGAGGACGC 1067 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 1325 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGACAGTTCCTTGTCGAGTGAGGACGC 1384 Query 1068 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACTGTAGCTTCTCAATG 1127 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1385 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACAGTAGCTTCTCAATG 1444 Query 1128 GTTGGAATTGCTTCATCAGGACCTCAAAGGCCGTGTTTCCGCTCTTCGGCGTAGCAAGAA 1187 |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||| Sbjct 1445 GTTGGAATTGCTTCATCAGGACATCAAAGGCCGTGTTTCTGCTCTTCGACGTAGCAGGAA 1504 Query 1188 GAGGGTTCGTGCAGTTGTCACGACAGAGCTACCTTTCTTGATAACGAAAGAGTTTCCACC 1247 ||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||||| | Sbjct 1505 GAGGGTTCGTGCAGTTGTCACGATAGAGTTACCTCACTTAATAAGGAAAGAGTTTCCAGC 1564 Query 1248 CGATCAAGAAAATGACCCAACTTTACT-CTTCGATGGGGCTTC-AAGGGCTTCAACAGTC 1305 ||||||||||||||||||||| |||| ||| | ||||||||| || ||||||||||||| Sbjct 1565 TGATCAAGAAAATGACCCAACTCTACTCCTT-GGTGGGGCTTCGAA-GGCTTCAACAGTC 1622 Query 1306 GATGTCCACAAGACCAGATGGATGACTTTGTTTAAGCAACTCGAACACAAGCTCTCAGAA 1365 ||| |||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1623 GATATCCATAAGAGCAGATGGATGACTCTGTTTAAGCAACTCGAACACAAGCTATCAGAA 1682 Query 1366 GAAGAGTCACAATTGTTTGTGAACTTTGAAAATATTCAGGAAAGCTGGTTAAACCAAGTG 1425 ||||||| | || | ||| |||||||||||||||||||||| Sbjct 1683 GAAGAGT--C------------AC-------A-ATT--GGAAAGCTGGTTAAACCAAGTG 1718 Query 1426 AGATATCTGCAATCACATTGTGATCAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1485 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1719 AGATATATGCAATCACATTGTGATGAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1778 Query 1486 AATTTCTTACACTTAGGGATGCCACTGGACTCTAG 1520 ||||||||||| |||||||||||| |||||||||| Sbjct 1779 AATTTCTTACAGTTAGGGATGCCATTGGACTCTAG 1813 Score = 178 bits (96), Expect = 2e-43 Identities = 104/108 (96%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1582 AGAGCTGTAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1641 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1812 AGAGCTGCAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1871 Query 1642 ATTTTCTCGACCTGCAGTTTTCTGGAGGAGAACATAACCTGTAGCTGA 1689 || | |||||||||||||||||| |||||||||||||||||||||||| Sbjct 1872 ATATACTCGACCTGCAGTTTTCTAGAGGAGAACATAACCTGTAGCTGA 1919 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83483506335 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5