BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325169 Length=285 Score E Sequences producing significant alignments: (Bits) Value AT2G16520.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 315 2e-85 > AT2G16520.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 72 Blast hits to 69 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7161922-7162580 REVERSE LENGTH=496 Length=496 Score = 315 bits (170), Expect = 2e-85 Identities = 234/265 (88%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 1 ATGGCATTGAAACGAGGACTAACCGAAGCCGTGAGTTTGGGGATCACTCATATCTCAATC 60 ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 197 ATGGCATTGAAGCTAGGACTAACTGAAGCCGTGAGTTTGGGGATCACTCATATCTCAATC 256 Query 61 TACTGCGATCATTATCACATTTTTGAACTTGTCACGGGGAGTTCCGGGCCTGAGAAAGAT 120 ||||||||||||| ||| ||||||||||| || | | |||| || | |||||| |||||| Sbjct 257 TACTGCGATCATTTTCAGATTTTTGAACTGGTTATGTGGAGATCAGTGCCTGATAAAGAT 316 Query 121 AGCATTGCCTTGCTAATGAATGATGTGCAACGCACCAGACAACAACTGACATCTAGCACC 180 |||||||| || ||||| ||||||||||||||| ||||||||| ||||||| ||||| Sbjct 317 AGCATTGCAATGATAATGTATGATGTGCAACGCATAAGACAACAATTGACATCAAGCACA 376 Query 181 CCTCTTCTGGTGACTGGAGATCAAACTAATAAGGTT-GCTTATAAACTTGCA-TCGGAAA 238 |||||||||||||||||| |||||||||||||| || |||||| |||||||| | | ||| Sbjct 377 CCTCTTCTGGTGACTGGAAATCAAACTAATAAG-TTAGCTTATGAACTTGCACTAG-AAA 434 Query 239 CACTCGTTTCTGAAATCAGCATAAG 263 |||| ||||| |||||||||||||| Sbjct 435 CACTAGTTTCAGAAATCAGCATAAG 459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13119882489 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5