BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325170

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05360.1 | Symbols:  | unknown protein; INVOLVED IN: biologi...   798    0.0  


> AT5G05360.1 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; LOCATED IN: chloroplast; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G38450.1); 
Has 84 Blast hits to 84 proteins in 24 species: Archae 
- 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses 
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:1588305-1589365 
FORWARD LENGTH=730
Length=730

 Score =  798 bits (432),  Expect = 0.0
 Identities = 521/559 (93%), Gaps = 25/559 (4%)
 Strand=Plus/Plus

Query  1    ATGGGAAAATCGATGGTCAGATTCGCAGAATTCGCCATTAGACTCTCTTCCGAGAATCCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  52   ATGGGAAAATCGATGGTCAGATTCGCAGAATTCGCCATTAGACTCTCTTCCGAGAATCCA  111

Query  61   ACCAGACCCCACAGACCTTCTCCTCCTCCACGGAACAAAGTCTTCGTCAAGAAGACGAC-  119
            |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct  112  ACCAGACCACACAGACCTTCTCCTTCTCCACGGAACAAAGTCTTCGTCAAGAAGACGACG  171

Query  120  --AG--A-CACGACACACCTCGATTACTCCAATCTTGTTAAGCTGGAGAAGGCGGGATCG  174
              ||  | |||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  172  AGAGACACCACGTCACACCTCGATTACTCCAATCTGGTTAAGCTGGAGAAGGCGGGATCG  231

Query  175  CACTCGGGTTCCAATCCCGCTCCGCCTTCGGGTTCGGATCCAATTAATCGGGTTCCCCTT  234
            ||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||| 
Sbjct  232  CACTCGGGTTCGAATCCCGCTCCGGCTTCGGGTTCGGATCCTATTAACCGGGTTCCCCTC  291

Query  235  GCTCAGGTCGTCGAGGATTGCGTCAGACGCTGGTTTCAGGATACGCTCAAGGAAGCCAAA  294
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  292  GCTCAGGTCGTCGAGGATTGCGTCAGACGCTGGTTCCAGGATACGCTCAAGGAAGCCAAA  351

Query  295  TCTGGTGACGTTGGTATGCAGGTCTTGGTTGGTCAGATGTATTGCAGCGGCTATGGAATC  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  TCTGGTGACGTTGGTATGCAGGTCTTGGTTGGTCAGATGTATTGCAGCGGCTATGGAATC  411

Query  355  CCCAAAGATGAAAACAAGGGTCGTGCTTGGATTAACAAAGCTTCAAGAACTAGATCATCA  414
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  CCTAAAGATGAAAACAAGGGTCGTGCTTGGATTAACAAAGCTTCAAGAACTAGATCATCA  471

Query  415  GCTTGGCAAGT---T-ATAA---T---G---------CAAGCGATTCAGATTCCAATGAT  455
            |||||||||||   | ||||   |   |         |||||||||||||||||||||||
Sbjct  472  GCTTGGCAAGTGAGTGATAAGCCTCCAGGGTATAATGCAAGCGATTCAGATTCCAATGAT  531

Query  456  AAGAAAGATTGATGATCATCTTTCGAATGTTTGTATTGCCAGTGACTTTGATTTGTTAGT  515
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  532  AAGAAAGATTGATGATCATCTTTTGAATGTTTGTATTGCCATTGACTTTGATTTGTTAGT  591

Query  516  TTCTCTCTCCTTTGTTTAA  534
            |||||||||||||||||||
Sbjct  592  TTCTCTCTCCTTTGTTTAA  610



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5