BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325171
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05365.1 | Symbols: | Heavy metal transport/detoxification ... 383 4e-106
> AT5G05365.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:1590036-1590861 FORWARD LENGTH=512
Length=512
Score = 383 bits (207), Expect = 4e-106
Identities = 226/235 (96%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATGTTGTGGAGCTGAAAGTGAATTTGCATTGCGACGAATGCATCAGGAAAATA 60
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 90 ATGGCTAATGTTGTGGAGCTAAAAGTGAATTTGCATTGTGATGAATGCATCAGGAAAATA 149
Query 61 CTTAAAGCCATCAAGAAAATTGAAGATATAG-AGACATACGATGTGGACACACAGCTGAA 119
||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 150 CTTAAAGCCATCAAGAAAATTGAAGATATAGAAG-CATACGATGTGGACACACAGCTCAA 208
Query 120 CAAAGTAACAGTCACAGGGAATGTAACAGAGGAACAAGTGATTAGGGTTCTTCAAAAGGT 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CAAAGTGACAGTCACAGGGAATGTAACAGAGGAACAAGTGATTAGGGTTCTTCAAAAGGT 268
Query 180 GAGGAAAGCTGCTGTTAAATGGGACCAAGACAATCAAACCCTCTTTGCGAACTAG 234
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 269 GAGGAAAGCTGCTGTTAAATGGGACCAAGACAATCAAACCCTCTTTACCAACTAG 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5