BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325175
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05440.1 | Symbols: PYL5, RCAR8 | Polyketide cyclase/dehydra... 992 0.0
> AT5G05440.1 | Symbols: PYL5, RCAR8 | Polyketide cyclase/dehydrase
and lipid transport superfamily protein | chr5:1609250-1610446
FORWARD LENGTH=1197
Length=1197
Score = 992 bits (537), Expect = 0.0
Identities = 588/613 (96%), Gaps = 2/613 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTCACCGGTGCAACTCCAACACGGCTCAGACGCCACAAACGGCTTCCACACGCTG 60
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 125 ATGAGGTCACCGGTGCAACTCCAACACGGCTCAGACGCCACTAACGGTTTCCACACGCTG 184
Query 61 CAGCCTCGCGATCAGAACGATGGTCCGATCAGGAGAGTGTGTCTCACGCGCGGTATGCAT 120
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 185 CAGCCTCACGATCAGACCGATGGTCCGATCAAGAGAGTGTGTCTCACGCGCGGTATGCAT 244
Query 121 GTCCCTGAGCACGTTGCGATGCACCACACACACGACGTTGGTCCAGACCAGTGCTGCTCT 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 245 GTCCCTGAACACGTTGCGATGCACCACACACACGACGTTGGTCCGGACCAGTGTTGCTCC 304
Query 181 TCGGTGGTGCAGATGATACACGCGCCGCCGGAGTCTGTGTGGGCTCTCGTGCGACGGTTT 240
||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| | ||||
Sbjct 305 TCGGTGGTGCAGATGATCCACGCGCCGCCTGAGTCCGTGTGGGCTCTTGTGCGGC-GTTT 363
Query 241 -GATAACCCGAAGGTTTACAAGAACTTCATCAGACAGTGCCGTATCGTCCAAGGCGATGG 299
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CGATAATCCGAAGGTTTACAAGAACTTCATCAGACAGTGCCGTATCGTCCAAGGCGATGG 423
Query 300 ACTACACGTCGGCGATCTACGGGAGGTCATGGTGGTCTCTGGACTCCCGGCGGTCTCGAG 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ACTACACGTCGGCGATCTCCGGGAGGTCATGGTGGTCTCTGGACTCCCGGCGGTCTCGAG 483
Query 360 CACCGAGAGGCTCGAGATCTTGGACGAGGAGCGTCACGTGATAAGCTTTAGTGTCGTTGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CACCGAGAGGCTCGAGATCTTGGACGAGGAGCGTCACGTGATAAGCTTTAGTGTCGTTGG 543
Query 420 TGGGGACCACAGGCTCAAGAACTACCGATCGGTGACGACACTACACACGGCGGACGATGA 479
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 544 TGGGGACCACAGGCTCAAGAACTACCGATCGGTGACGACACTACACGCGTCGGACGACGA 603
Query 480 AGGGACCGTCGTGGTGGAGTCTTACATCGTCGATGTGCCGCCGGGAAACACGGAGGAGGA 539
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 604 AGGTACCGTGGTGGTGGAGTCTTACATCGTTGATGTGCCGCCGGGAAACACGGAGGAGGA 663
Query 540 AACTCTAAGCTTCGTTGATACTATCGTCCGGTGCAACCTTCAGTCTCTGGCTAGAAGTAC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 664 AACTCTAAGCTTCGTTGATACTATCGTCCGGTGCAACCTTCAGTCTCTGGCTCGAAGTAC 723
Query 600 CAACCGGCAATAA 612
|||||||||||||
Sbjct 724 CAACCGGCAATAA 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5