BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325180
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like fam... 3038 0.0
> AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like family
protein | chr5:1624206-1629234 FORWARD LENGTH=2093
Length=2093
Score = 3038 bits (1645), Expect = 0.0
Identities = 1778/1843 (96%), Gaps = 6/1843 (0%)
Strand=Plus/Plus
Query 18 GCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACGTTGCACGCGAA 77
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 167 GCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACATTGCACGCGAA 226
Query 78 GATCAATCGGAAGAAACTAGACAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAA 137
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 227 GATCAACCGGAAGAAACTAGATAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAA 286
Query 138 TCCGTCGGTTCCGATGGCTCTTAGACTCTCTGGGATTCTTATGGGTGGTGTTGTGATTGT 197
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 287 TCCGTCGGTTCCGATGGCTCTTAGACTCTCCGGGATTCTTATGGGTGGTGTTGTGATTGT 346
Query 198 TTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCCTTCTGGTGGAAATTAA 257
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 347 TTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCTTTCTGGTTGAAATTAA 406
Query 258 TGGAGCTTGGCGAACAAAAGCTGTTCCGGATCCCACCTTACTACCTAAAGGAAGAACCCA 317
|||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 407 TGGAGCTTGGCGCACAAAATCTGTTCCGGATCCCACTTTACTACCTAAAGGAAAAACCCA 466
Query 318 TGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGA 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGA 526
Query 378 ACAGACTCGTAATATTCCTAAATATGGCAATTACATGGATTTTCAGCAGACTTTTATTTC 437
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 527 ACAGACTCGTAATGTTCCTAAATTTGGCAATTACATGGATTTTCAGCAGACTTTTATTTC 586
Query 438 CATGAGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCA 497
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CATGCGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCA 646
Query 498 GTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGAC 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGAC 706
Query 558 CAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACTCA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 707 CAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACACA 766
Query 618 GATGAACTTCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACC 677
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GATGAACTCCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACC 826
Query 678 TCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCTCCACGAGCAACA 737
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 827 TCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCGCCAGGAGCAACA 886
Query 738 GGAGCGTCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGA 797
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GGAGAATCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGA 946
Query 798 GGAACATGATAGACCACAACCAGCaaaaaaaaGAGCAAGAAAGACAGCTACTTCAGCGAT 857
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 947 GGAACACGATAGACCACAACCAGCGAAAAAGAGAGCAAGAAAGACAGCTACTTCAGCGAT 1006
Query 858 GGATTATGAGCAGACTATTATCGCTGGTCACGTTTACCAGTCATGGCTCCAGGATACTTC 917
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1007 GGATTATGAGCAAACTATTATCGCTGGTCATGTTTACCAGTCATGGCTCCAGGATACTTC 1066
Query 918 TGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGAAATGAA 977
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1067 TGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGACATGGA 1126
Query 978 AATTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAGCATGTGGAAAGTTC 1037
|| ||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1127 AAGTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAG---G---ACAGTTC 1180
Query 1038 TTACCCGCCTCAGCTTTACGAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATC 1097
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TTACCCGCCTCAGCTTTACCAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATC 1240
Query 1098 ATCTGAAACTCGACGTCCTGATCTCTGTGCAGAACAATCTCCAGGGTTTGTTCAGGAGAG 1157
||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1241 ATCTGAATCTCGACATCCTGATCTCCGTGCGGAACAATCTCCAGGGTTTGTTCAGGAGAG 1300
Query 1158 AATGCAGAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCT 1217
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 AATGCATAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCT 1360
Query 1218 TGGTAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAG 1277
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TGATAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAG 1420
Query 1278 CATGATGGCTGGATCTCGAGCAAGTCCTGAAACTATTAACCGCCAGGCTGCTGATATTAA 1337
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1421 CATGATGGCTGGATCTCGAGCAAGCCCTGAAACTATTAACCGCCAGGCTGCTGATATTAA 1480
Query 1338 TGTCACGCCTTTCTATTCTGGAGACGACGTGAGATCCATGCCTAGCACACCATCCGCACG 1397
||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1481 TGTCACGCCATTCTATTCTGGAGATGATGTGAGATCCATGCCTAGTACACCATCCGCACG 1540
Query 1398 TGGAGCAGCTTCAGTAAACAACATAGAGATCAGCTCTAAAAGTCGCATGTTTGATAGAAA 1457
||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1541 TGGAGCAGCTTCAATTAACAACATAGAGATCAGCTCTAAAAGTCGCATGCCCAATAGAAA 1600
Query 1458 AAGGCCAACTTCCTCACCAAGAAGAGGACTCGAACCAGTAGCGGAAGAGAGACCATGGGA 1517
||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1601 AAGACCAAATTCCTCACCAAGAAGAGGACTCGAACCAGTGGCGGAAGAGAGACCGTGGGA 1660
Query 1518 GCACCGTGAATATGACTTTGAGTTTTCAATATTACCTGAAAAACGTTTCACAGCCGATAA 1577
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1661 GCACCGTGAATATGAGTTTGAGTTTTCAATGTTACCTGAAAAACGCTTCACAGCCGATAA 1720
Query 1578 AGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGA 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 AGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGA 1780
Query 1638 CGAGAAGATAACAGATAGCATCAAAAGTCATCTGAAGACACACTTTGAAACACCTGGAGC 1697
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1781 CGAGATGATAACAGATAGCATCAAAAGTCACCTGAAGACACACTTTGAAACACCTGGAGC 1840
Query 1698 TCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAA 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 TCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAA 1900
Query 1758 ACTCTTCTTCCAATCCTGTGTGTTAGCGACTCGCGGAGTCATTAAGGTAAACCAAACACA 1817
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |
Sbjct 1901 ACTCTTCTTCCAATCCTGTGTGTTAGCTACTCGCGGAGTCATCAAGGTAAACCAAGCAGA 1960
Query 1818 GCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAA 1860
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAA 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5