BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325212
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05870.1 | Symbols: UGT76C1 | UDP-glucosyl transferase 76C1 ... 2041 0.0
> AT5G05870.1 | Symbols: UGT76C1 | UDP-glucosyl transferase 76C1
| chr5:1767639-1769262 FORWARD LENGTH=1524
Length=1524
Score = 2041 bits (1105), Expect = 0.0
Identities = 1286/1374 (94%), Gaps = 10/1374 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAGAAACGAGAGACAAGTGATTCTCTTTCCTCTACCATTACAAGGTTGCATA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 45 ATGGAGAAGAGAAACGAGAGACAAGTGATTCTTTTTCCTCTACCATTACAAGGTTGCATA 104
Query 61 AACCCTATGCTCCAGCTAGCAAAGATCCTTTATTCAAGAGGTTTCTCGATCACCATCATT 120
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 105 AACCCTATGCTTCAGCTAGCAAAGATCCTTTACTCAAGAGGTTTTTCGATCACCATCATC 164
Query 121 CACACGCGCTTCAACGCGCCCAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CACACGCGCTTCAACGCGCCCAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATC 224
Query 181 TC-CGACGGATTGTCCGAATCTCAGACTCAATCTCGTGATGTTTTGCTTCAACTCACGCT 239
| |||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 225 -CGCGACGGCTTGTCTGAATCTCAGACTCAATCTCGTGATCTTTTGCTTCAACTCACGCT 283
Query 240 TCTCAACAACAATTG-CGAGAACCCATTTCGAGAGTGTTTGGCTAAAGTCATCAAACCTA 298
||||||||||||||| | ||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 284 TCTCAACAACAATTGTC-AGATCCCATTTCGAGAGTGTTTGGCTAAACTCATTAAACCTA 342
Query 299 GTTCAGATTCAGGAACAGAGGAAAGGAAGATTAGCTGTTTGATCGATGATTCTGGCTGGG 358
|||||||||||||||||||||| ||||| ||||||||| ||||||||||||| || ||||
Sbjct 343 GTTCAGATTCAGGAACAGAGGATAGGAAAATTAGCTGTGTGATCGATGATTCCGGTTGGG 402
Query 359 TTTTCACACAATCCGTGTCGGAGAGTTTCAATCTTCCGAGATTTGTCCTATGTGCTTATA 418
||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||
Sbjct 403 TTTTCACACAATCCGTGGCGGAGAGTTTTAATCTTCCTCGATTTGTCCTCTGTGCTTATA 462
Query 419 AATTCTCATTCTTTCTTGGACATCTGCTTGTTCCTCAGATTCGTCGTGAAGGGTTTCTTC 478
| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 463 AGTTCTCTTTCTTTCTCGGACATTTTCTTGTTCCTCAGATTCGTCGTGAAGGGTTTCTTC 522
Query 479 CAGTACCAGATTCGGAAGCAGAGGATCTCGTTCATGAGTTTCCACCGCTTCGAAAGAAAG 538
|||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 523 CAGTACCAGATTCGGAGGCAGATGATCTAGTTCCTGAGTTTCCACCGCTTCGAAAGAAAG 582
Query 539 ATCTTTCGAGAATAATGGGAACCAGCGCTCAGAGTGAGCCTCTCGATTCTTACTTGCATA 598
||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||| ||
Sbjct 583 ATCTTTCGAGAATTATGGGAACCAGCGCTCAGAGTAAGCCTCTAGATGCTTACTTGCTTA 642
Query 599 AGATAATCGAAGCGACGAAGCCAGCTTCAGGGCTCATAGTTATGTCATGCGAAGAGCTTG 658
||||| |||| ||||||||||||||||||||| | ||||||||||| ||| |||||||||
Sbjct 643 AGATACTCGACGCGACGAAGCCAGCTTCAGGGATTATAGTTATGTCCTGCAAAGAGCTTG 702
Query 659 ACCTA-GATTCACTTACTGAGTCCAACAAAGTCTTCAGCTTTCCGATATTCCCCATTGGC 717
||| | ||||||||| |||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 703 ACC-ATGATTCACTTGCTGAGTCCAACAAAGTTTTCAGCATTCCGATATTTCCCATTGGC 761
Query 718 CCATTTCACATCCATGACGTGCCAGCCTCGTCTAGCAGCTTGTTAGAACCGGACCAGAGT 777
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 762 CCTTTTCACATTCATGACGTCCCAGCCTCGTCTAGCAGCTTGTTAGAACCGGACCAGAGT 821
Query 778 TGCATTCCATGGTTAGATAAGCATGAAACGAGATCAGTAATCTACGTGAGCTTAGGGAGC 837
||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 822 TGCATTCCATGGTTAGATATGCGTGAAACGAGATCAGTAGTCTACGTGAGCTTAGGGAGC 881
Query 838 ATTGCGAGTCTTAACGAGTCTGACTTCTTGGAGATTGCTTGTGGACTAAGAAACACTAAC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 882 ATTGCGAGTCTTAACGAGTCTGACTTCTTGGAGATTGCTTGTGGACTAAGAAACACCAAC 941
Query 898 CAATCCTTCTTGTGGGTTGTCCGGCCTGGTTCAGTCCACGGCAGAGATTGGATCGAATCG 957
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 942 CAATCCTTCTTGTGGGTTGTCCGGCCTGGTTCAGTCCATGGCAGAGATTGGATCGAATCA 1001
Query 958 TTACCCTCAGGGTTCATGGAAAGTCTCGAGGGTAAGGGAAAGATAGTGAAATGGGCACCG 1017
||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 1002 TTACCTTCAGGGTTCATGGAAAGTCTCGATGGTAAAGGAAAGATAGTGAGATGGGCACCG 1061
Query 1018 CAGCTAGATGTTCTTGCGCATAGAGCCACGGGAGGGTTTTTGACGCATAATGGATGGAAC 1077
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1062 CAGCTAGACGTTCTTGCGCATAGAGCCACGGGAGGGTTTTTGACTCATAATGGATGGAAC 1121
Query 1078 TCGACGCTAGAGAGTATATGCGAAGGAGTACCTATGATCTGCTTGCCTTTTGTGTGGGAC 1137
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1122 TCGACATTAGAGAGTATATGCGAAGGAGTACCTATGATCTGCTTGCCTTGTAAGTGGGAC 1181
Query 1138 CAATTTGTAAACGCGAGATAT-ATCAGCGAAGTTTGGAGGGTTGGGATACACTTAGAAGG 1196
||||||||||||||||||| | || ||||||||||||||||||||||| ||||| |||||
Sbjct 1182 CAATTTGTAAACGCGAGAT-TCATAAGCGAAGTTTGGAGGGTTGGGATTCACTTGGAAGG 1240
Query 1197 TCGGATagagagaagagagatcgagagagCTGTGATAAGACTAATGGTTGAGTCGGAAGG 1256
|||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1241 TCGGATAGAGCGAAGAGAAATCGAGAGAGCTGTTATAAGACTAATGGTTGAGTCGAAAGG 1300
Query 1257 AGA-GAAGATTCGAGATAGAATCAAAGTCTTGCGAGATGAAGTAAGAAGATCGGTTAAAC 1315
||| || |||||||| ||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1301 AGAAGA-GATTCGAGGTAGAATCAAAGTCTTGCGAGACGAAGTAAGAAGGTCAGTTAAAC 1359
Query 1316 AAGGAGGTTCGGCATCTCGATCTTTAGATGAGTTGGTTGATCGTATATCAATCA 1369
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1360 AAGGAGGTTCGTCATATCGATCTTTAGATGAGTTGGTTGATCGTATATCAATCA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5