BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325218
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleot... 2848 0.0
> AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleotide
exchange factor 5 | chr5:1785927-1788436 FORWARD LENGTH=2010
Length=2010
Score = 2848 bits (1542), Expect = 0.0
Identities = 1748/1845 (95%), Gaps = 24/1845 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATTTAGTGAAGAGCTGCGCAGGGATCGAGAAGAAAAGAAGCAATTTGACT-CA 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 102 ATGGAGAATTTAGTGAAGAGCTGCGCAGGGATCGAGAAGAAAAGAAGCAATTTGACTCCA 161
Query 60 TTCGGA-GGAAGATATGGTAACAGAGTCAAAGGAGAGAAGCAGCACGAGCGAATCTAGCT 118
|| || ||||||||| | |||||||||||||||||||||||||| |||| | | ||||
Sbjct 162 -TC-GATGGAAGATATACTTACAGAGTCAAAGGAGAGAAGCAGCACTAGCGGAGCGAGCT 219
Query 119 ACGAGGGTTCCTCCGGCACCACCGTCGCTTCGTCTTCTCCACCACCACAACCGTCGCAGA 178
|||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 220 ACGAAAGCTCCTCCACCACCACCGTCGCTTCGTCTTCTCCACCACCACCACCGTCGCAGA 279
Query 179 TTCTGGGTTGGCCGATCAGAAAAGCTTCATTTCGTAAGAATTCCAAGGAGAATGTTAATT 238
|||||||||||||||| ||||||||||||||||| || ||||| ||||||| ||||||||
Sbjct 280 TTCTGGGTTGGCCGATTAGAAAAGCTTCATTTCGGAAAAATTCGAAGGAGAGTGTTAATT 339
Query 239 TGGATCATAAGAAATCT-ACCCTTCACGATGATTCTGGGTTTCAAG-GAAAAGAGATGAA 296
| ||||||||||||| | |||||||||||||||||||||||| ||| | |||||||||||
Sbjct 340 TTGATCATAAGAAAT-TAACCCTTCACGATGATTCTGGGTTTAAAGCG-AAAGAGATGAA 397
Query 297 TTTTGCAGACGTGGATATGATGAAGGAGAGATTTGCAAAGTTGTTGCTTGGTGAAGATAT 356
|| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 398 TTCTGCAGATGTGGAGATGATGAAGGAGAGATTTGCAAAGTTGTTACTTGGTGAAGATAT 457
Query 357 GTCAGGTTCTGGTAAAGGTGTGTGTACAGCTTTAGCCATCTCCAACGCCATCACCAATCT 416
||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 458 GTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCT 517
Query 417 CTGTGCTACGATTTTTGGGCAACTATGGAGATTAGAGCCACTTTCAAGTGAAAAGAAGGA 476
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 518 CTGTGCTACGATTTTCGGGCAACTATGGAGATTAGAGCCACTTTCAAGCGAAAAGAAGGA 577
Query 477 GATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTTGAGTTAAC 536
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 578 GATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTCGAGTTAAC 637
Query 537 ACCTTCAACGCAAACTTATCCAGACGGCAACAAGTTTGAGGTCATGACTTGTCGACCAAG 596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ACCTTCAACACAAACTTATCCAGACGGCAACAAGTTTGAGGTCATGACTTGTCGACCAAG 697
Query 597 ATTTGATCTTTTCATCAATCTCCCGGCTCTTCGTAAACTAGACAATATGCTTCTCGATAT 656
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 698 ATTTGATCTTTTCATCAACCTCCCTGCTCTCCGTAAACTAGACAATATGCTTCTCGATAT 757
Query 657 ATTGGCGAGTTTCAAGAAAACCGAGTTCTGGTATGTTGATCAAGGGATTGTTGCTTCGGA 716
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 758 ATTGGCGAGTTTCAAGAAAACTGAGTTCTGGTATGTTGATCAAGGGATCGTTGCTTCGGA 817
Query 717 AAACGATGGCTCAGCTTCTTTCCGCAGAAAGATTCAGCGTCAAGAGGAGAAGTGGTGGTT 776
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 818 AAACGATGGCTCAGCTTCTTTCCGCAGAAAGATTCAGCGCCAAGAGGAGAAATGGTGGTT 877
Query 777 GCCTGTTCCCCGTTTAGCACCTAATGGTCTTACTGAAGAAGCAAGAACAGAATTGAATCA 836
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 878 GCCTGTTCCTCGTTTAGCACCGAATGGTCTTACTGAAGAAGCAAGAACAGAATTGAATCA 937
Query 837 CAAGAGGGAATGTGCGACGCAGATACTTAAAGCTGCAATGGCCATTAACAGCCTTGCTTT 896
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 938 TAAGAGGGAATGTGCGACGCAGATACTTAAAGCTGCAATGGCTATTAACAGCCTTGCTTT 997
Query 897 AACCGAAATGGATGTTCCTGAAA-CATACCTTGAAACTCTTCCAAAGAATGGTAGGTCCT 955
||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 998 AACCGAAATGGATGTTCCT-AAATCATACCTTGAAACCCTTCCAAAGAACGGTAGGTCCT 1056
Query 956 GCCTTGGGGATGTTATCTACAGGTACATAACATCTGATAAATTTTCTGCGGAGTGTCTTC 1015
||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 1057 GCCTTGGGGATGTTATCTACAGGTATGTAACATCTGACAAATTTTCTGCGGAGTCTCTTC 1116
Query 1016 TCGATTGCCTTGATCTGTCCTCTGAGCATATTGCTCTTGATATTGCAAACCGTGTGGAAG 1075
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1117 TCGATTGCCTTGATCTGTCCTCTGAGCATATTGCTCTTGATATCGCAAACCGTGTGGAAG 1176
Query 1076 CTTCGATATATGTTTGGCGGAGAAGAGTTCAAACAAAACTTGGAGTCAACAACAATAATA 1135
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1177 CTTCGATATATGTTTGGAGGAGAAGAGTTCAAACAAAACTTGGAGT---CAACAATAATA 1233
Query 1136 CTTCAAGCACTACTCCAAAGTTAACATGGGAAATGGTCAAAGAGCTAATGGCTGCTGGTG 1195
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1234 CTTCAAGCACTACTCCAAAGTTAACATGGGAAATGGTCAAAGAACTAATGGCTGCTGGTG 1293
Query 1196 ACAAAAGGGGATTGCTTGTGGAGAGATCCGAAACTCTCTTACGTTGCTTGAAGCAGCGGT 1255
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1294 ACAAAAGGGGATTGCTTGTGGAGAGATCGGAAACTCTCTTACGTTGCTTGAAGCAGCGGT 1353
Query 1256 TTCCATCTCTAACGCAGACTTCTCTAGACATTAGCAAGATTCAATGGAACAAGGATATTG 1315
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1354 TTCCTTCTCTAACGCAGACTTCTCTAGACATAAGCAAGATTCAATGGAACAAGGATATTG 1413
Query 1316 GGAAATCAATCCTCGAAAGCTACTCAAGGGCGTTGGAGAGCTTAGCATCAAACATCATTG 1375
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1414 GGAAATCAATCCTCGAAAGCTACTCAAGGGCTTTGGAGAGCTTAGCATCAAACATCATAG 1473
Query 1376 CACGAATCGACGATTTACTCTACGTGGACGACTTAACAAAGCGATCAGATGATAACATTC 1435
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1474 CACGAATCGATGATTTACTCTACGTGGACGACTTAACAAAGCAATCAGATGATAACAATC 1533
Query 1436 TGTTGTCAAGTCCAGCGGTCTGCAGCATTATAGCTCACAAGAAAGTAGTACCACTCCCTT 1495
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1534 TTTTGTCAAGTCCAGCGGTCAGCAGCATTATAGCTCACAAGAAAGTAGTACCACTCCCTT 1593
Query 1496 ATCTAATATCTGCATCAGGAACTCCATACAGAACAAGCTTCTCAACAACACCAGGCTTCT 1555
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1594 ATCTAATATCTGCATCAGGAACTCCATATAGAACAAGCTTCTCAACAACACCAGGCTTCT 1653
Query 1556 CTCCTTCAATGATTAGCCCCAAGAAAGGAGAGAGGAGGACACCTTACTCCAGCAGAG-AC 1614
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 1654 CTCCTTCAATGATTAGCCCCAAGAAAGGAGAGAGGAGAACACCTTACTCCAGCA-AGGAC 1712
Query 1615 ACTAACAAAATCATTGAGAAAGGTCTTCCTTCTCGAGGATTTGGAGTGAGAAGAGTCTTG 1674
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1713 ACTAACAAAATCATTGAGAAAGGTCTTCCTTCTCGAGGATATGGAGTGAGAAGAGTCTTG 1772
Query 1675 AACAATTATCTTGGCATGGAATCGAAACTGAAAATATGCGTGAATCCGTCAGATAATGCA 1734
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1773 AACAATTATCTTGGCATGGAATCAAAACTGAAAATATGCGTTAATCCGTCAGATAATGCA 1832
Query 1735 GATACAGCTGTGATTTGC-AAA---G-AA-G--GTGGA-GAAGAGAAGAAAAGAAATTCA 1785
|||||||| |||||| | ||| | || | ||||| ||||||||||||||||| |||
Sbjct 1833 GATACAGCAGTGATTAACCAAATCAGCAAAGACGTGGAAGAAGAGAAGAAAAGAAACTCA 1892
Query 1786 ATATCAGTCCATCAAAAGGGTCCTCCAAAGTACACAGTCTCTTAA 1830
| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1893 ACATCAGTCCATCAAAAGGGTCCTCCAAAGTACACTGTCTCTTAA 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90561783180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5