BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325224
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05990.1 | Symbols: | Mitochondrial glycoprotein family pro... 1186 0.0
> AT5G05990.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr5:1806761-1807907 REVERSE LENGTH=942
Length=942
Score = 1186 bits (642), Expect = 0.0
Identities = 737/781 (94%), Gaps = 14/781 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTCTTGTACGTCGCGCAGCTTCTCGGTTTGTCGGAAATTATTGCAAGAACCGT 60
|||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||
Sbjct 13 ATGGCGACTCTTGTACGTCGCGCAGCTTCTCGGTTTGTGGGAAGTTATTGGAAAAACCGT 72
Query 61 TCTTTCGTTTACTCATTGTTGGACCAGTCCGCTTAC-GGCCGGAGGCGACATCTGACGCC 119
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 73 TCTTTCGTTTACTCATTGTTGGACCAGTCCGCTT-CTGGCCGGAGGCGACATCTGACGCC 131
Query 120 GTCGGTTGACCAGAACGTTCCATTTACCACATCGACCAAAAAGAGAGCTTCTCCAACCGA 179
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 132 GTCGGTTGACCGGAATGTTCCATTTACCACATCGACCAAAAAGAGAGCTTCTCCAACTGA 191
Query 180 TCCGCTTCTTCGAATCATCGAA-ACGGAGATTGGATACGCCGAGAAAGCTGATGATTA-C 237
|||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
Sbjct 192 TCCGCTTCTTCGAATCATTGAAGA-GGAGATTGGATACGCCGAGAAAGCTGATGATTATC 250
Query 238 GATCGAGTTGAAGAAACTCCAAGTGGTTTTCCC-TTCAAAATGGAAGACAAACCTGGAGG 296
||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 251 -ATCGAGTTGAAGAAACTCCAAGTGG-CTTCCCTTTCGAAATGGAAGACAAACCAGGAGG 308
Query 297 AAAGATCGTGACATTGACTAGAGAATACGAAGGAGAGACTGTTAAAGTTGAAGTACACAT 356
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 309 GAAGATTGTGACATTGACTAGAGAATATGAAGGAGAGACTGTTAAAGTTGAAGTACACAT 368
Query 357 GACCAATCTTGTCACAGGTGACAaagaagacgatgaagatgatgaggaagaggcagagaa 416
||| |||||||| || |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 369 GACTAATCTTGTGACTGGTGACAAAGAAGATGATGAAGATGATGAGGAAGAAGCAGAGAA 428
Query 417 tgaagaagatgaagatgaggataagcc-tgagaagCCTAAGCAATCGAATGTGCCTCTCT 475
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 429 TGAAGAAGATGAAGATGAGGATAAGCCAT-TGAAGCCTAAGCAATCGAATGTGCCTCTCT 487
Query 476 TAGTTACTTTTTCCAAGAAGACAGGATCC-AGTTTGGAATTCAGATGTACTGCTTTTCCA 534
|||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 488 TAGTAACTCTTTCCAAGAAGACAGGA-CCAAGTTTGGAATTTAGATGTACTGCTTTTCCA 546
Query 535 GACAAGATTGTAATCAAGGACATGTGGGTTACATTTCCTGATGATCCATCTAAAGATGAG 594
|||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 547 GACAGGATTGCGATCAAGGACATGTGGGTTACATTTCCTGATGATCCTTCCAAAGATGAG 606
Query 595 CTTGCTTATGAAGGCCCTTCCTTCAGGGTTTTGGATGAAAAGCTAAGGAAGG-TATTCCA 653
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 607 CTTGCTTATGAAGGACCTTCCTTCAGGGTTTTGGATGAAAAGCTAAGGAAGGCT-TTCCA 665
Query 654 TAGGTACATTGAGATTAGAGGGATAAAGCCGAGCATGATCAACTTCTTACACGAGTACAT 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 666 TAGGTACATTGAGATTAGAGGGATAAAGCCGAGCATGATCAACTTCTTGCACGAGTACAT 725
Query 714 GATCAACAAGGATAGTAGAGAGCACTTACTGTGGTTGAAATCTCTCAAGAACTTTGTCAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GATCAACAAGGATAGTAGAGAGCACTTACTGTGGTTGAAATCTCTCAAGAACTTTGTCAA 785
Query 774 G 774
|
Sbjct 786 G 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5