BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325233
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11510.1 | Symbols: | Ribosomal protein S11 family protein ... 357 4e-98
AT2G36160.1 | Symbols: | Ribosomal protein S11 family protein ... 279 9e-75
> AT3G11510.1 | Symbols: | Ribosomal protein S11 family protein
| chr3:3623457-3624940 REVERSE LENGTH=827
Length=827
Score = 357 bits (193), Expect = 4e-98
Identities = 268/302 (89%), Gaps = 14/302 (5%)
Strand=Plus/Plus
Query 2 TGTCACTCTTGGACCATCTGTTCTTGAGGGAGAGCAAGTTTTTGGTGTTGTTCACATCTT 61
||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 113 TGTGACTCTTGGACCTTCTGTTCGTGAAGGAGAGCAAGTTTTTGGTGTTGTTCACATCTT 172
Query 62 TGCATCATTCAATGACACTTTCATTTCTTCACGTGACTGATCTGTCTGGCAGAGAAACTC 121
|||||| |||||||||||||||| |||| ||||||||||| || || ||||||||||
Sbjct 173 TGCATCTTTCAATGACACTTTCA----TTCATGTGACTGATCTCTCCGGTAGAGAAACTC 228
Query 122 TCGTTCGTATCA-C--T-G--T---TGTAAAGGCTGATCGTGATGAGTCTTCTCCTTATG 172
|||| || |||| | | | | || |||||||| ||||||||||| ||||||||||
Sbjct 229 TCGTCCGCATCACCGGTGGCATGAAGGTGAAGGCTGACCGTGATGAGTCCTCTCCTTATG 288
Query 173 CTGCTATGCTTGCAGCTCAAGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGCCA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CTGCTATGCTTGCAGCTCAAGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGCCA 348
Query 233 TGCATGTGAAGCTCCGTGCCACCGGTGGAAACAAGACCAAGACTCCCAGGTCCTGGTGCT 292
|||| |||||||||||||| || || |||||||| ||||||||||| |||||||||||||
Sbjct 349 TGCACGTGAAGCTCCGTGCTACTGGAGGAAACAAAACCAAGACTCC-AGGTCCTGGTGCT 407
Query 293 CA 294
||
Sbjct 408 CA 409
> AT2G36160.1 | Symbols: | Ribosomal protein S11 family protein
| chr2:15169818-15171353 FORWARD LENGTH=754
Length=754
Score = 279 bits (151), Expect = 9e-75
Identities = 252/298 (85%), Gaps = 18/298 (6%)
Strand=Plus/Plus
Query 2 TGTCACTCTTGGACCATCTGTTCTTGAGGGAGAGCAAGTTTTTGGTGTTGTTCACATCTT 61
||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 146 TGTGACTCTTGGACCATCTGTTCGTGAGGGAGAGCAAGTTTTCGGTGTTGTCCACATCTT 205
Query 62 TGCATCATTCAATGACACTTTCATTTCTTCACGTGACTGATCTGTCTGG-CAGAGAAACT 120
||| |||||||| |||||||||| |||| || |||||| ||||||| | | ||||||
Sbjct 206 TGCTTCATTCAACGACACTTTCA----TTCATGTTACTGATTTGTCTGGTC-GTGAAACT 260
Query 121 CTCGTTCGTATCA-C--T-G--T---TGT-AAAGGCTGATCGTGATGAGTCTTCTCCTTA 170
|| || ||||||| | | | | || ||| |||||| | |||||||| || |||||
Sbjct 261 CTTGTCCGTATCACCGGTGGAATGAAGGTGAAA-GCTGATAGAGATGAGTCCTCACCTTA 319
Query 171 TGCTGCTATGCTTGCAGCTCAAGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGC 230
|| |||||||||||||| || ||||||||||| |||||||||| ||||| ||||||||
Sbjct 320 CGCAGCTATGCTTGCAGCACAGGATGTTGCTCAGCGATGCAAGGAACTTGGTATCACTGC 379
Query 231 CATGCATGTGAAGCTCCGTGCCACCGGTGGAAACAAGACCAAGACTCCCAGGTCCTGG 288
|||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 380 CATGCATGTGAAGCTCCGTGCCACAGGTGGAAACAAGACCAAGACACCT-GGTCCTGG 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5